Query         gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 109
No_of_seqs    3 out of 5
Neff          1.6 
Searched_HMMs 13730
Date          Wed Jun  1 11:01:18 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780996.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1i9za_ d.151.1.2 (A:) Synapto  80.7     1.7 0.00012   22.1   5.3   56   43-101   111-169 (345)
  2 d2imqx1 d.151.1.2 (X:3-282) Sa  56.7     7.1 0.00051   18.4   6.0   36   67-102   102-137 (280)
  3 d1zwxa1 d.151.1.3 (A:41-333) S  45.8      11 0.00077   17.3   4.1   31   72-102   119-149 (293)
  4 d1mv5a_ c.37.1.12 (A:) Multidr  35.1     3.7 0.00027   20.0  -0.0   56   10-68     36-91  (242)
  5 d1oxxk2 c.37.1.12 (K:1-242) Gl  30.0       2 0.00015   21.5  -2.1   53   10-62     39-91  (242)
  6 d1lnia_ d.1.1.2 (A:) RNase Sa   28.4      12 0.00086   17.1   1.6   35   73-107    60-94  (96)
  7 d2pmka1 c.37.1.12 (A:467-707)   26.8     3.4 0.00024   20.3  -1.4   56   10-68     37-92  (241)
  8 d1g2912 c.37.1.12 (1:1-240) Ma  26.8     6.1 0.00044   18.7  -0.1   52   10-61     37-89  (240)
  9 d2onka1 c.37.1.12 (A:1-240) Mo  26.8     7.1 0.00052   18.4   0.2   50   10-64     32-81  (240)
 10 d3dhwc1 c.37.1.12 (C:1-240) Me  26.7       2 0.00015   21.5  -2.5   55    8-62     37-91  (240)
 11 d2ddra1 d.151.1.3 (A:7-305) Sp  26.4      22  0.0016   15.4   4.6   31   74-104   121-151 (299)
 12 d1pyla_ d.1.1.2 (A:) Ribonucle  25.8      12  0.0009   16.9   1.3   35   72-107    60-94  (96)
 13 d1mgra_ d.1.1.2 (A:) Cytotoxic  25.1      11 0.00083   17.1   1.0   35   73-107    61-95  (97)
 14 d1b74a1 c.78.2.1 (A:1-105) Glu  21.0      19  0.0014   15.9   1.5   26    6-31      3-28  (105)
 15 d2awna2 c.37.1.12 (A:4-235) Ma  20.7      13 0.00092   16.9   0.5   48   10-62     34-81  (232)
 16 d1jj7a_ c.37.1.12 (A:) Peptide  20.6     5.3 0.00039   19.1  -1.4   56   10-68     48-103 (251)
 17 d2gdta1 d.346.1.1 (A:2-116) Ns  20.6      19  0.0014   15.9   1.4   48   43-90     36-83  (115)

No 1  
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=80.72  E-value=1.7  Score=22.07  Aligned_cols=56  Identities=13%  Similarity=0.202  Sum_probs=39.9

Q ss_pred             HCEEEEEEEECCHHHH---HHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEE
Q ss_conf             0001244564000113---3322478771012300077136899999789089999874101
Q gi|254780996|r   43 SDINTAIAIRKDVARV---LQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKS  101 (109)
Q Consensus        43 ~dihTAIaiRK~~~rv---LQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKS  101 (109)
                      -.|..+|.+|+.....   .+.+.-..   |....+||..+|-+-+.++++.+.+++.||-+
T Consensus       111 ~g~~l~vf~r~~~~~~i~~v~~~~~~~---g~~g~~gnKGaV~vr~~i~~t~l~fvn~HL~a  169 (345)
T d1i9za_         111 VGTALMIFCKESCLPSIKNVEGTVKKT---GLGGVSGNKGAVAIRFDYEDTGLCFITSHLAA  169 (345)
T ss_dssp             TTEEEEEEEEGGGGGGEEEEEEEEEEC---CCC----CCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCCEEEEEECCHHCCCCCCCEEEEEEC---CCCCCCCCCCEEEEEEEECCEEEEEEEECCCC
T ss_conf             670899998251115565312678965---76885368864999999989999999704667


No 2  
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]}
Probab=56.71  E-value=7.1  Score=18.37  Aligned_cols=36  Identities=3%  Similarity=-0.031  Sum_probs=29.2

Q ss_pred             CCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf             710123000771368999997890899998741013
Q gi|254780996|r   67 APQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSS  102 (109)
Q Consensus        67 ~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKSf  102 (109)
                      ...+.....+++.++-+-+++.|+++.+.+.||.+.
T Consensus       102 ~~~~~~~~~~~~~~v~~~~~i~~~~~~~in~hl~~~  137 (280)
T d2imqx1         102 TIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDE  137 (280)
T ss_dssp             EEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTT
T ss_pred             EEECCCCCCCCCCEEEEEEEECCEEEEEECCCCCCC
T ss_conf             675047755677589999999999999634567866


No 3  
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]}
Probab=45.80  E-value=11  Score=17.33  Aligned_cols=31  Identities=13%  Similarity=0.250  Sum_probs=25.3

Q ss_pred             CHHCCCCEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf             3000771368999997890899998741013
Q gi|254780996|r   72 TPRMGNRKTVELLIEIDDQKVWLLNVHLKSS  102 (109)
Q Consensus        72 ~sraGnRraVElL~Eidg~KiWlLdiHLKSf  102 (109)
                      ......|..+...+.++|+++.+.++||++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~  149 (293)
T d1zwxa1         119 ADRLSNKGFAYVKIMKNGKPYHIIGTHTQAD  149 (293)
T ss_dssp             GGGGBCCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEEEEECC
T ss_conf             2001341489999963993479998441036


No 4  
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=35.06  E-value=3.7  Score=20.00  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=41.2

Q ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCCC
Q ss_conf             73778872466787523852111123577765100012445640001133322478771
Q gi|254780996|r   10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAP   68 (109)
Q Consensus        10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~~   68 (109)
                      -|||||...-..+-|.+.-++=.+...|.+..+-+.   -.+|+...-|.|..++..++
T Consensus        36 ~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~---~~~r~~i~~v~Q~~~lf~~t   91 (242)
T d1mv5a_          36 PSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL---ENWRSQIGFVSQDSAIMAGT   91 (242)
T ss_dssp             CTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC---SCCTTTCCEECCSSCCCCEE
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCH---HHHHHHEEEECCCCCCCCCC
T ss_conf             999979999999999609898779889988442467---88874367975665457853


No 5  
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=30.00  E-value=2  Score=21.54  Aligned_cols=53  Identities=15%  Similarity=0.008  Sum_probs=38.0

Q ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHH
Q ss_conf             73778872466787523852111123577765100012445640001133322
Q gi|254780996|r   10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVS   62 (109)
Q Consensus        10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~S   62 (109)
                      -|||||...-..+-|+..-++-++...|.+..+..-...-..|+...-|.|..
T Consensus        39 ~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~   91 (242)
T d1oxxk2          39 PSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW   91 (242)
T ss_dssp             SCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTS
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHCCCEEEECCC
T ss_conf             99980999999997586888745999999951373111531204514773043


No 6  
>d1lnia_ d.1.1.2 (A:) RNase Sa {Streptomyces aureofaciens [TaxId: 1894]}
Probab=28.42  E-value=12  Score=17.05  Aligned_cols=35  Identities=14%  Similarity=0.227  Sum_probs=26.6

Q ss_pred             HHCCCCEEEEEEEEECCEEEEEEEEEEEEEEEEEE
Q ss_conf             00077136899999789089999874101353430
Q gi|254780996|r   73 PRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKK  107 (109)
Q Consensus        73 sraGnRraVElL~Eidg~KiWlLdiHLKSfCflds  107 (109)
                      +..++|-|--|+.--++..+|.-.=|-+|||.++.
T Consensus        60 pg~~~RGarRIV~g~~~g~~YYT~DHY~SF~~i~~   94 (96)
T d1lnia_          60 PGARTRGTRRIITGEATQEDYYTGDHYATFSLIDQ   94 (96)
T ss_dssp             TTCSSCCSCEEEEESSTTCEEEESSTTSCCEEEET
T ss_pred             CCCCCCCCCEEEECCCCCCEEECCCHHHHHEECCC
T ss_conf             99989999848878999878862376441510146


No 7  
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}
Probab=26.82  E-value=3.4  Score=20.27  Aligned_cols=56  Identities=23%  Similarity=0.140  Sum_probs=38.8

Q ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCCC
Q ss_conf             73778872466787523852111123577765100012445640001133322478771
Q gi|254780996|r   10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAP   68 (109)
Q Consensus        10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~~   68 (109)
                      -|||||...-..+-|.++.++=.+...|.|..+-+..   .+|+...-|.|..+...++
T Consensus        37 ~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~---~lr~~i~~v~Q~~~lf~~T   92 (241)
T d2pmka1          37 RSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN---WLRRQVGVVLQDNVLLNRS   92 (241)
T ss_dssp             STTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHH---HHHHHEEEECSSCCCTTSB
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHH---HHHCEEEEEECCCCCCCCC
T ss_conf             9999899999999735788888999999994400246---5535288982446557840


No 8  
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=26.77  E-value=6.1  Score=18.74  Aligned_cols=52  Identities=23%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEE-ECCHHHHHHH
Q ss_conf             737788724667875238521111235777651000124456-4000113332
Q gi|254780996|r   10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAI-RKDVARVLQV   61 (109)
Q Consensus        10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIai-RK~~~rvLQ~   61 (109)
                      -|||||...-..+-|+..-++=++...|.+.....-...+.. |+...-|.|.
T Consensus        37 ~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~   89 (240)
T d1g2912          37 PSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS   89 (240)
T ss_dssp             STTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSC
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCCCCCEECCCC
T ss_conf             99980999999996487889898999999803566444245322551200221


No 9  
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.76  E-value=7.1  Score=18.36  Aligned_cols=50  Identities=16%  Similarity=0.108  Sum_probs=35.9

Q ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCC
Q ss_conf             7377887246678752385211112357776510001244564000113332247
Q gi|254780996|r   10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYP   64 (109)
Q Consensus        10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYp   64 (109)
                      -|||||...-..+-|++..++=.+...|.|..+-.     ..|++..-|.|...+
T Consensus        32 pnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~-----~~~r~ig~v~Q~~~l   81 (240)
T d2onka1          32 PTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-----PERRGIGFVPQDYAL   81 (240)
T ss_dssp             CTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----TTTSCCBCCCSSCCC
T ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCC-----HHHCCCEEECCCHHH
T ss_conf             99980999999997399989628999999988699-----899285225231443


No 10 
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=26.65  E-value=2  Score=21.54  Aligned_cols=55  Identities=13%  Similarity=0.030  Sum_probs=37.2

Q ss_pred             EEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHH
Q ss_conf             9973778872466787523852111123577765100012445640001133322
Q gi|254780996|r    8 IFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVS   62 (109)
Q Consensus         8 ify~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~S   62 (109)
                      +=-|||||...-..+-|+.+-++=.+.+.|-|..+.+-...-.+|+...-|.|..
T Consensus        37 iG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~   91 (240)
T d3dhwc1          37 IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHF   91 (240)
T ss_dssp             EESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSC
T ss_pred             ECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHHCCCCCCCCCC
T ss_conf             8999898889999875886366773288676852087555115541664302252


No 11 
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]}
Probab=26.37  E-value=22  Score=15.44  Aligned_cols=31  Identities=23%  Similarity=0.307  Sum_probs=26.6

Q ss_pred             HCCCCEEEEEEEEECCEEEEEEEEEEEEEEE
Q ss_conf             0077136899999789089999874101353
Q gi|254780996|r   74 RMGNRKTVELLIEIDDQKVWLLNVHLKSSCV  104 (109)
Q Consensus        74 raGnRraVElL~Eidg~KiWlLdiHLKSfCf  104 (109)
                      ....+.++++.+.++++++-+.+.||++..-
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~  151 (299)
T d2ddra1         121 NLSNKGFVYTKIKKNDRFVHVIGTHLQAEDS  151 (299)
T ss_dssp             -CCCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred             CCCCEEEEEEEEECCCEEEEEEECCCCCCCC
T ss_conf             4342069999980698089999724667877


No 12 
>d1pyla_ d.1.1.2 (A:) Ribonuclease Sa2 {Streptomyces aureofaciens [TaxId: 1894]}
Probab=25.76  E-value=12  Score=16.95  Aligned_cols=35  Identities=14%  Similarity=0.131  Sum_probs=27.3

Q ss_pred             CHHCCCCEEEEEEEEECCEEEEEEEEEEEEEEEEEE
Q ss_conf             300077136899999789089999874101353430
Q gi|254780996|r   72 TPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKK  107 (109)
Q Consensus        72 ~sraGnRraVElL~Eidg~KiWlLdiHLKSfCflds  107 (109)
                      ++..++|.+--|+.- ++..+|.-.=|-+|||-++.
T Consensus        60 tpg~~~RGarRIV~g-~dg~~YYT~DHY~SF~~i~~   94 (96)
T d1pyla_          60 TPGSNDRGTRRVVTG-GYGEQYWSPDHYATFQEIDP   94 (96)
T ss_dssp             CTTCSSCCSCEEEEC-TTSCEEEESSTTSSCEEEET
T ss_pred             CCCCCCCCCCEEEEC-CCCCEEECCCHHHHHEECCC
T ss_conf             999888898807867-99998874385440330678


No 13 
>d1mgra_ d.1.1.2 (A:) Cytotoxic RNase Sa3 {Streptomyces aureofaciens [TaxId: 1894]}
Probab=25.09  E-value=11  Score=17.15  Aligned_cols=35  Identities=17%  Similarity=0.066  Sum_probs=26.0

Q ss_pred             HHCCCCEEEEEEEEECCEEEEEEEEEEEEEEEEEE
Q ss_conf             00077136899999789089999874101353430
Q gi|254780996|r   73 PRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKK  107 (109)
Q Consensus        73 sraGnRraVElL~Eidg~KiWlLdiHLKSfCflds  107 (109)
                      +..++|-|--|+.--+...+|.-+=|-+|||-++.
T Consensus        61 pg~~~RGarRIV~G~~~g~~YYT~DHY~SF~~I~~   95 (97)
T d1mgra_          61 PGSPTRGARRIITGQQWQEDYYTADHYASFRRVDF   95 (97)
T ss_dssp             TTCSSCCSCEEEECSSTTCEEEESSTTSCCEEEET
T ss_pred             CCCCCCCCCEEEECCCCCCEEECCCHHHHHEECCC
T ss_conf             99998998748878999888875275340242567


No 14 
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=20.99  E-value=19  Score=15.85  Aligned_cols=26  Identities=23%  Similarity=0.224  Sum_probs=23.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHCCCCCC
Q ss_conf             89997377887246678752385211
Q gi|254780996|r    6 WYIFYSGCGKNPVWDSMKGCLNFSSY   31 (109)
Q Consensus         6 w~ify~~~~~~~~~~s~kr~~n~sk~   31 (109)
                      --||-||.|--.|+..+.+.+|+..+
T Consensus         3 IgifDSGiGGLtVl~~l~~~lP~~~~   28 (105)
T d1b74a1           3 IGIFDSGVGGLTVLKAIRNRYRKVDI   28 (105)
T ss_dssp             EEEEESSSTHHHHHHHHHHHSSSCEE
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCCE
T ss_conf             99983897879999999997899987


No 15 
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.68  E-value=13  Score=16.89  Aligned_cols=48  Identities=25%  Similarity=0.341  Sum_probs=33.5

Q ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHH
Q ss_conf             73778872466787523852111123577765100012445640001133322
Q gi|254780996|r   10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVS   62 (109)
Q Consensus        10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~S   62 (109)
                      -|||||...-..+-|+..-++=++...|-+..+.  .   ..|++..-|.|..
T Consensus        34 psGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~--~---~~~r~ig~v~Q~~   81 (232)
T d2awna2          34 PSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--P---PAERGVGMVFQSY   81 (232)
T ss_dssp             CTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTS--C---GGGTCEEEECSSC
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCC--C---HHHCEEEEECCCC
T ss_conf             9998299999999658788888899999977888--6---4443222343342


No 16 
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.62  E-value=5.3  Score=19.08  Aligned_cols=56  Identities=14%  Similarity=0.020  Sum_probs=37.3

Q ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCCC
Q ss_conf             73778872466787523852111123577765100012445640001133322478771
Q gi|254780996|r   10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAP   68 (109)
Q Consensus        10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~~   68 (109)
                      -|||||...-..+-|.+.-++=.+...|.+..+-+.   -..|+...-|.|..+...++
T Consensus        48 ~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~---~~~r~~i~~v~Q~~~lf~~t  103 (251)
T d1jj7a_          48 PNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEH---RYLHRQVAAVGQEPQVFGRS  103 (251)
T ss_dssp             STTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH---HHHHHHEEEECSSCCCCSSB
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHH---HHHHHHHHHCCCCCCCCCCC
T ss_conf             999849999999861437876899889985311013---78887765404565002763


No 17 
>d2gdta1 d.346.1.1 (A:2-116) Nsp1 {SARS coronavirus [TaxId: 227859]}
Probab=20.58  E-value=19  Score=15.90  Aligned_cols=48  Identities=21%  Similarity=0.259  Sum_probs=38.4

Q ss_pred             HCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCE
Q ss_conf             000124456400011333224787710123000771368999997890
Q gi|254780996|r   43 SDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQ   90 (109)
Q Consensus        43 ~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~   90 (109)
                      +..-.-....|++.--|.+.|......+..|.--..+.|||.-|.||-
T Consensus        36 ngtcglvelekgvlpqleqpyvfikrsdalstnhghkvvelvaemdgi   83 (115)
T d2gdta1          36 NGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGI   83 (115)
T ss_dssp             HTCEEEECCCTTSGGGSCSCEEEEECCSSCCCCCSSCCCEEEEESSCT
T ss_pred             CCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCC
T ss_conf             785106873136563445866999804333356783322432342461


Done!