Query gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 109 No_of_seqs 3 out of 5 Neff 1.6 Searched_HMMs 13730 Date Wed Jun 1 11:01:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780996.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1i9za_ d.151.1.2 (A:) Synapto 80.7 1.7 0.00012 22.1 5.3 56 43-101 111-169 (345) 2 d2imqx1 d.151.1.2 (X:3-282) Sa 56.7 7.1 0.00051 18.4 6.0 36 67-102 102-137 (280) 3 d1zwxa1 d.151.1.3 (A:41-333) S 45.8 11 0.00077 17.3 4.1 31 72-102 119-149 (293) 4 d1mv5a_ c.37.1.12 (A:) Multidr 35.1 3.7 0.00027 20.0 -0.0 56 10-68 36-91 (242) 5 d1oxxk2 c.37.1.12 (K:1-242) Gl 30.0 2 0.00015 21.5 -2.1 53 10-62 39-91 (242) 6 d1lnia_ d.1.1.2 (A:) RNase Sa 28.4 12 0.00086 17.1 1.6 35 73-107 60-94 (96) 7 d2pmka1 c.37.1.12 (A:467-707) 26.8 3.4 0.00024 20.3 -1.4 56 10-68 37-92 (241) 8 d1g2912 c.37.1.12 (1:1-240) Ma 26.8 6.1 0.00044 18.7 -0.1 52 10-61 37-89 (240) 9 d2onka1 c.37.1.12 (A:1-240) Mo 26.8 7.1 0.00052 18.4 0.2 50 10-64 32-81 (240) 10 d3dhwc1 c.37.1.12 (C:1-240) Me 26.7 2 0.00015 21.5 -2.5 55 8-62 37-91 (240) 11 d2ddra1 d.151.1.3 (A:7-305) Sp 26.4 22 0.0016 15.4 4.6 31 74-104 121-151 (299) 12 d1pyla_ d.1.1.2 (A:) Ribonucle 25.8 12 0.0009 16.9 1.3 35 72-107 60-94 (96) 13 d1mgra_ d.1.1.2 (A:) Cytotoxic 25.1 11 0.00083 17.1 1.0 35 73-107 61-95 (97) 14 d1b74a1 c.78.2.1 (A:1-105) Glu 21.0 19 0.0014 15.9 1.5 26 6-31 3-28 (105) 15 d2awna2 c.37.1.12 (A:4-235) Ma 20.7 13 0.00092 16.9 0.5 48 10-62 34-81 (232) 16 d1jj7a_ c.37.1.12 (A:) Peptide 20.6 5.3 0.00039 19.1 -1.4 56 10-68 48-103 (251) 17 d2gdta1 d.346.1.1 (A:2-116) Ns 20.6 19 0.0014 15.9 1.4 48 43-90 36-83 (115) No 1 >d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=80.72 E-value=1.7 Score=22.07 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=39.9 Q ss_pred HCEEEEEEEECCHHHH---HHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEE Q ss_conf 0001244564000113---3322478771012300077136899999789089999874101 Q gi|254780996|r 43 SDINTAIAIRKDVARV---LQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKS 101 (109) Q Consensus 43 ~dihTAIaiRK~~~rv---LQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKS 101 (109) -.|..+|.+|+..... .+.+.-.. |....+||..+|-+-+.++++.+.+++.||-+ T Consensus 111 ~g~~l~vf~r~~~~~~i~~v~~~~~~~---g~~g~~gnKGaV~vr~~i~~t~l~fvn~HL~a 169 (345) T d1i9za_ 111 VGTALMIFCKESCLPSIKNVEGTVKKT---GLGGVSGNKGAVAIRFDYEDTGLCFITSHLAA 169 (345) T ss_dssp TTEEEEEEEEGGGGGGEEEEEEEEEEC---CCC----CCEEEEEEEEETTEEEEEEEEECCC T ss_pred CCCEEEEEECCHHCCCCCCCEEEEEEC---CCCCCCCCCCEEEEEEEECCEEEEEEEECCCC T ss_conf 670899998251115565312678965---76885368864999999989999999704667 No 2 >d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Probab=56.71 E-value=7.1 Score=18.37 Aligned_cols=36 Identities=3% Similarity=-0.031 Sum_probs=29.2 Q ss_pred CCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEEE Q ss_conf 710123000771368999997890899998741013 Q gi|254780996|r 67 APQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSS 102 (109) Q Consensus 67 ~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKSf 102 (109) ...+.....+++.++-+-+++.|+++.+.+.||.+. T Consensus 102 ~~~~~~~~~~~~~~v~~~~~i~~~~~~~in~hl~~~ 137 (280) T d2imqx1 102 TIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDE 137 (280) T ss_dssp EEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTT T ss_pred EEECCCCCCCCCCEEEEEEEECCEEEEEECCCCCCC T ss_conf 675047755677589999999999999634567866 No 3 >d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Probab=45.80 E-value=11 Score=17.33 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=25.3 Q ss_pred CHHCCCCEEEEEEEEECCEEEEEEEEEEEEE Q ss_conf 3000771368999997890899998741013 Q gi|254780996|r 72 TPRMGNRKTVELLIEIDDQKVWLLNVHLKSS 102 (109) Q Consensus 72 ~sraGnRraVElL~Eidg~KiWlLdiHLKSf 102 (109) ......|..+...+.++|+++.+.++||++. T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~ 149 (293) T d1zwxa1 119 ADRLSNKGFAYVKIMKNGKPYHIIGTHTQAD 149 (293) T ss_dssp GGGGBCCEEEEEEEEETTEEEEEEEEECCCC T ss_pred CCCCCCCEEEEEEEECCCCEEEEEEEEEECC T ss_conf 2001341489999963993479998441036 No 4 >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Probab=35.06 E-value=3.7 Score=20.00 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=41.2 Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCCC Q ss_conf 73778872466787523852111123577765100012445640001133322478771 Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAP 68 (109) Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~~ 68 (109) -|||||...-..+-|.+.-++=.+...|.+..+-+. -.+|+...-|.|..++..++ T Consensus 36 ~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~---~~~r~~i~~v~Q~~~lf~~t 91 (242) T d1mv5a_ 36 PSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL---ENWRSQIGFVSQDSAIMAGT 91 (242) T ss_dssp CTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC---SCCTTTCCEECCSSCCCCEE T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCH---HHHHHHEEEECCCCCCCCCC T ss_conf 999979999999999609898779889988442467---88874367975665457853 No 5 >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=30.00 E-value=2 Score=21.54 Aligned_cols=53 Identities=15% Similarity=0.008 Sum_probs=38.0 Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHH Q ss_conf 73778872466787523852111123577765100012445640001133322 Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVS 62 (109) Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~S 62 (109) -|||||...-..+-|+..-++-++...|.+..+..-...-..|+...-|.|.. T Consensus 39 ~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~ 91 (242) T d1oxxk2 39 PSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91 (242) T ss_dssp SCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTS T ss_pred CCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHCCCEEEECCC T ss_conf 99980999999997586888745999999951373111531204514773043 No 6 >d1lnia_ d.1.1.2 (A:) RNase Sa {Streptomyces aureofaciens [TaxId: 1894]} Probab=28.42 E-value=12 Score=17.05 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=26.6 Q ss_pred HHCCCCEEEEEEEEECCEEEEEEEEEEEEEEEEEE Q ss_conf 00077136899999789089999874101353430 Q gi|254780996|r 73 PRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKK 107 (109) Q Consensus 73 sraGnRraVElL~Eidg~KiWlLdiHLKSfCflds 107 (109) +..++|-|--|+.--++..+|.-.=|-+|||.++. T Consensus 60 pg~~~RGarRIV~g~~~g~~YYT~DHY~SF~~i~~ 94 (96) T d1lnia_ 60 PGARTRGTRRIITGEATQEDYYTGDHYATFSLIDQ 94 (96) T ss_dssp TTCSSCCSCEEEEESSTTCEEEESSTTSCCEEEET T ss_pred CCCCCCCCCEEEECCCCCCEEECCCHHHHHEECCC T ss_conf 99989999848878999878862376441510146 No 7 >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Probab=26.82 E-value=3.4 Score=20.27 Aligned_cols=56 Identities=23% Similarity=0.140 Sum_probs=38.8 Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCCC Q ss_conf 73778872466787523852111123577765100012445640001133322478771 Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAP 68 (109) Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~~ 68 (109) -|||||...-..+-|.++.++=.+...|.|..+-+.. .+|+...-|.|..+...++ T Consensus 37 ~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~---~lr~~i~~v~Q~~~lf~~T 92 (241) T d2pmka1 37 RSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN---WLRRQVGVVLQDNVLLNRS 92 (241) T ss_dssp STTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHH---HHHHHEEEECSSCCCTTSB T ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHH---HHHCEEEEEECCCCCCCCC T ss_conf 9999899999999735788888999999994400246---5535288982446557840 No 8 >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Probab=26.77 E-value=6.1 Score=18.74 Aligned_cols=52 Identities=23% Similarity=0.265 Sum_probs=34.6 Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEE-ECCHHHHHHH Q ss_conf 737788724667875238521111235777651000124456-4000113332 Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAI-RKDVARVLQV 61 (109) Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIai-RK~~~rvLQ~ 61 (109) -|||||...-..+-|+..-++=++...|.+.....-...+.. |+...-|.|. T Consensus 37 ~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~ 89 (240) T d1g2912 37 PSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89 (240) T ss_dssp STTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSC T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCCCCCEECCCC T ss_conf 99980999999996487889898999999803566444245322551200221 No 9 >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Probab=26.76 E-value=7.1 Score=18.36 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=35.9 Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCC Q ss_conf 7377887246678752385211112357776510001244564000113332247 Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYP 64 (109) Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYp 64 (109) -|||||...-..+-|++..++=.+...|.|..+-. ..|++..-|.|...+ T Consensus 32 pnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~-----~~~r~ig~v~Q~~~l 81 (240) T d2onka1 32 PTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-----PERRGIGFVPQDYAL 81 (240) T ss_dssp CTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----TTTSCCBCCCSSCCC T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCC-----HHHCCCEEECCCHHH T ss_conf 99980999999997399989628999999988699-----899285225231443 No 10 >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Probab=26.65 E-value=2 Score=21.54 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=37.2 Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHH Q ss_conf 9973778872466787523852111123577765100012445640001133322 Q gi|254780996|r 8 IFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVS 62 (109) Q Consensus 8 ify~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~S 62 (109) +=-|||||...-..+-|+.+-++=.+.+.|-|..+.+-...-.+|+...-|.|.. T Consensus 37 iG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~ 91 (240) T d3dhwc1 37 IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91 (240) T ss_dssp EESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSC T ss_pred ECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHHCCCCCCCCCC T ss_conf 8999898889999875886366773288676852087555115541664302252 No 11 >d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Probab=26.37 E-value=22 Score=15.44 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=26.6 Q ss_pred HCCCCEEEEEEEEECCEEEEEEEEEEEEEEE Q ss_conf 0077136899999789089999874101353 Q gi|254780996|r 74 RMGNRKTVELLIEIDDQKVWLLNVHLKSSCV 104 (109) Q Consensus 74 raGnRraVElL~Eidg~KiWlLdiHLKSfCf 104 (109) ....+.++++.+.++++++-+.+.||++..- T Consensus 121 ~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~ 151 (299) T d2ddra1 121 NLSNKGFVYTKIKKNDRFVHVIGTHLQAEDS 151 (299) T ss_dssp -CCCCEEEEEEEEETTEEEEEEEEECCCC-- T ss_pred CCCCEEEEEEEEECCCEEEEEEECCCCCCCC T ss_conf 4342069999980698089999724667877 No 12 >d1pyla_ d.1.1.2 (A:) Ribonuclease Sa2 {Streptomyces aureofaciens [TaxId: 1894]} Probab=25.76 E-value=12 Score=16.95 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=27.3 Q ss_pred CHHCCCCEEEEEEEEECCEEEEEEEEEEEEEEEEEE Q ss_conf 300077136899999789089999874101353430 Q gi|254780996|r 72 TPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKK 107 (109) Q Consensus 72 ~sraGnRraVElL~Eidg~KiWlLdiHLKSfCflds 107 (109) ++..++|.+--|+.- ++..+|.-.=|-+|||-++. T Consensus 60 tpg~~~RGarRIV~g-~dg~~YYT~DHY~SF~~i~~ 94 (96) T d1pyla_ 60 TPGSNDRGTRRVVTG-GYGEQYWSPDHYATFQEIDP 94 (96) T ss_dssp CTTCSSCCSCEEEEC-TTSCEEEESSTTSSCEEEET T ss_pred CCCCCCCCCCEEEEC-CCCCEEECCCHHHHHEECCC T ss_conf 999888898807867-99998874385440330678 No 13 >d1mgra_ d.1.1.2 (A:) Cytotoxic RNase Sa3 {Streptomyces aureofaciens [TaxId: 1894]} Probab=25.09 E-value=11 Score=17.15 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=26.0 Q ss_pred HHCCCCEEEEEEEEECCEEEEEEEEEEEEEEEEEE Q ss_conf 00077136899999789089999874101353430 Q gi|254780996|r 73 PRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKK 107 (109) Q Consensus 73 sraGnRraVElL~Eidg~KiWlLdiHLKSfCflds 107 (109) +..++|-|--|+.--+...+|.-+=|-+|||-++. T Consensus 61 pg~~~RGarRIV~G~~~g~~YYT~DHY~SF~~I~~ 95 (97) T d1mgra_ 61 PGSPTRGARRIITGQQWQEDYYTADHYASFRRVDF 95 (97) T ss_dssp TTCSSCCSCEEEECSSTTCEEEESSTTSCCEEEET T ss_pred CCCCCCCCCEEEECCCCCCEEECCCHHHHHEECCC T ss_conf 99998998748878999888875275340242567 No 14 >d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]} Probab=20.99 E-value=19 Score=15.85 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=23.2 Q ss_pred EEEEECCCCCCCHHHHHHHHCCCCCC Q ss_conf 89997377887246678752385211 Q gi|254780996|r 6 WYIFYSGCGKNPVWDSMKGCLNFSSY 31 (109) Q Consensus 6 w~ify~~~~~~~~~~s~kr~~n~sk~ 31 (109) --||-||.|--.|+..+.+.+|+..+ T Consensus 3 IgifDSGiGGLtVl~~l~~~lP~~~~ 28 (105) T d1b74a1 3 IGIFDSGVGGLTVLKAIRNRYRKVDI 28 (105) T ss_dssp EEEEESSSTHHHHHHHHHHHSSSCEE T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCE T ss_conf 99983897879999999997899987 No 15 >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=20.68 E-value=13 Score=16.89 Aligned_cols=48 Identities=25% Similarity=0.341 Sum_probs=33.5 Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHH Q ss_conf 73778872466787523852111123577765100012445640001133322 Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVS 62 (109) Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~S 62 (109) -|||||...-..+-|+..-++=++...|-+..+. . ..|++..-|.|.. T Consensus 34 psGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~--~---~~~r~ig~v~Q~~ 81 (232) T d2awna2 34 PSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--P---PAERGVGMVFQSY 81 (232) T ss_dssp CTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTS--C---GGGTCEEEECSSC T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCC--C---HHHCEEEEECCCC T ss_conf 9998299999999658788888899999977888--6---4443222343342 No 16 >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Probab=20.62 E-value=5.3 Score=19.08 Aligned_cols=56 Identities=14% Similarity=0.020 Sum_probs=37.3 Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCCC Q ss_conf 73778872466787523852111123577765100012445640001133322478771 Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAP 68 (109) Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~~ 68 (109) -|||||...-..+-|.+.-++=.+...|.+..+-+. -..|+...-|.|..+...++ T Consensus 48 ~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~---~~~r~~i~~v~Q~~~lf~~t 103 (251) T d1jj7a_ 48 PNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEH---RYLHRQVAAVGQEPQVFGRS 103 (251) T ss_dssp STTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH---HHHHHHEEEECSSCCCCSSB T ss_pred CCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHH---HHHHHHHHHCCCCCCCCCCC T ss_conf 999849999999861437876899889985311013---78887765404565002763 No 17 >d2gdta1 d.346.1.1 (A:2-116) Nsp1 {SARS coronavirus [TaxId: 227859]} Probab=20.58 E-value=19 Score=15.90 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=38.4 Q ss_pred HCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCE Q ss_conf 000124456400011333224787710123000771368999997890 Q gi|254780996|r 43 SDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQ 90 (109) Q Consensus 43 ~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~ 90 (109) +..-.-....|++.--|.+.|......+..|.--..+.|||.-|.||- T Consensus 36 ngtcglvelekgvlpqleqpyvfikrsdalstnhghkvvelvaemdgi 83 (115) T d2gdta1 36 NGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGI 83 (115) T ss_dssp HTCEEEECCCTTSGGGSCSCEEEEECCSSCCCCCSSCCCEEEEESSCT T ss_pred CCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCC T ss_conf 785106873136563445866999804333356783322432342461 Done!