BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780996|ref|YP_003065409.1| hypothetical protein
CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62]
(109 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040673|gb|ACT57469.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 109
Score = 227 bits (579), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ
Sbjct: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
Query: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ
Sbjct: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
>gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040680|gb|ACT57476.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 304
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 18/109 (16%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
P++ W IFYS + +N S D N+ DI+TAIA+RK RVLQ
Sbjct: 84 FPKNTWCIFYS----------TERLINHSKRDSNN--------DIHTAIAVRKKNVRVLQ 125
Query: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
SYPL ++ R GNR+ VELL+EI+ +K+W+L++HLKS C + ++
Sbjct: 126 QSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLE 174
>gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040474|gb|ACT57270.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 231
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 27/110 (24%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
P DKW I YSG +TD+ ++TAI IRK +LQ
Sbjct: 67 FPNDKWDILYSGS-------------------------NTDKHAMHTAIVIRKGAIHLLQ 101
Query: 61 VSYPLPAPQE-ITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
SY LP E + + G R+ VE+L E+D +K+WLL++HLKS C + I+
Sbjct: 102 KSY-LPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIE 150
>gi|315122019|ref|YP_004062508.1| hypothetical protein CKC_01345 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495421|gb|ADR52020.1| hypothetical protein CKC_01345 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 315
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 25/109 (22%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
PED W I YSG D+DE ++TAI RK VL+
Sbjct: 99 FPEDTWEILYSGN-------------------------DSDEHTVHTAIVARKGTVHVLE 133
Query: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
SY ++ + G R++VE+L E++ K+WLL++HLKS C V ++
Sbjct: 134 KSYLSMDTNKLDSKAGKRRSVEILFEVNGIKIWLLDIHLKSFCFVDSLK 182
>gi|190892922|ref|YP_001979464.1| hypothetical protein RHECIAT_CH0003338 [Rhizobium etli CIAT 652]
gi|190698201|gb|ACE92286.1| hypothetical protein RHECIAT_CH0003338 [Rhizobium etli CIAT 652]
Length = 357
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 33 DNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEI------TPRMGNRKTVELLIE 86
+NS + + D DI TAIA +K + ++ +V P + TPR R V + I+
Sbjct: 97 NNSSHCNEDIDDIFTAIAYKKSLGQLTEVQVPQLSVMHTSECANETPRP-VRGGVGIQIQ 155
Query: 87 IDDQKVWLLNVHLKSSC 103
D++ + +L+VHLK+SC
Sbjct: 156 RDNETIVVLSVHLKASC 172
>gi|226363110|ref|YP_002780892.1| ABC transporter ATP-binding protein [Rhodococcus opacus B4]
gi|226241599|dbj|BAH51947.1| putative ABC transporter ATP-binding protein [Rhodococcus opacus
B4]
Length = 383
Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 11 SGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQE 70
SGCGK + + G L + SG I DE DI A A R+DVA V Q SY L
Sbjct: 38 SGCGKTTLLRMLAGLL-----EPTSGRILLDEDDITAAPARRRDVAMVFQ-SYALYPHLS 91
Query: 71 ITPRMG 76
+ +G
Sbjct: 92 VAKNLG 97
>gi|229543444|ref|ZP_04432504.1| Ferritin Dps family protein [Bacillus coagulans 36D1]
gi|229327864|gb|EEN93539.1| Ferritin Dps family protein [Bacillus coagulans 36D1]
Length = 149
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 16 NPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEITPRM 75
NPV ++KG L SS + SGN T+E TA D A ++ L + R+
Sbjct: 68 NPV-ATLKGSLELSSVQEASGNESTEEMVQGTA----NDFA---MIAKELEEAIGLANRI 119
Query: 76 GNRKTVELLIEID---DQKVWLLNVHL 99
G+ T ++ I I D+ +W+LN L
Sbjct: 120 GDDATADMFINIQETLDKNIWMLNAFL 146
>gi|148670476|gb|EDL02423.1| mCG1041398 [Mus musculus]
Length = 122
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 17 PVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMG 76
P+ + K C S DD+S D S + +I K+ AR QV P AP+ +PR G
Sbjct: 12 PILSANKSCSGDHSPDDSSSGTAADFSRSTRSQSI-KEAARACQVLSPAAAPRCPSPRCG 70
Query: 77 NRK 79
R+
Sbjct: 71 GRQ 73
>gi|189198571|ref|XP_001935623.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187981571|gb|EDU48197.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1554
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 13 CGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEIT 72
CG V+DS+ + + Y+ S ++T E+ +NTA A R+ + V PLP Q
Sbjct: 900 CGSVGVFDSVMSGIRQALYNHRSPTMETVETILNTAFAERRFMLDVFMTPRPLPCNQ--- 956
Query: 73 PRMGNRKTVELLIEIDDQKVWLLNVHLK 100
P + + I+ +VW + VH K
Sbjct: 957 PTISLSQLALHTGHINGSRVW-IGVHGK 983
>gi|148982124|ref|ZP_01816600.1| hypothetical protein VSWAT3_19371 [Vibrionales bacterium SWAT-3]
gi|145960657|gb|EDK26003.1| hypothetical protein VSWAT3_19371 [Vibrionales bacterium SWAT-3]
Length = 291
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 35 SGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWL 94
+GN E + T A+RK VA +PL E T R ++IE + + + +
Sbjct: 97 NGNHQFKEVNQYTGFAVRKGVALTDYADFPL----ETTSNSKLRFASYIVIETETKPIHM 152
Query: 95 LNVHLKSSC 103
L+VHLK+ C
Sbjct: 153 LSVHLKAGC 161
>gi|291336267|gb|ADD95832.1| predicted ATPase [uncultured organism MedDCM-OCT-S09-C213]
Length = 890
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 18 VWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVS----------YPLPA 67
V+D + ++ N D DES+IN +I+K++ R+L ++ LPA
Sbjct: 204 VYDCNQKIISLDEAFKNYKCYDKDESEINIKTSIKKNLPRILSIAPYGRECKRLKPSLPA 263
Query: 68 PQEITPRMGNRKTVELLIEID 88
P E+ R+ ++T E ++D
Sbjct: 264 PMEVNRRIKPKRTREERQDLD 284
>gi|330934709|ref|XP_003304667.1| hypothetical protein PTT_17316 [Pyrenophora teres f. teres 0-1]
gi|311318549|gb|EFQ87168.1| hypothetical protein PTT_17316 [Pyrenophora teres f. teres 0-1]
Length = 1553
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 13 CGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQ 69
CG V+DS+ + + Y+ S ++T E+ +NTA A R+ + V PLP Q
Sbjct: 899 CGSVGVFDSVMSGIRQALYNHRSPTMETVETILNTAFAERRFMLDVFMTPRPLPCNQ 955
>gi|302406648|ref|XP_003001160.1| sulfite reductase flavoprotein alpha-component [Verticillium
albo-atrum VaMs.102]
gi|261360418|gb|EEY22846.1| sulfite reductase flavoprotein alpha-component [Verticillium
albo-atrum VaMs.102]
Length = 1587
Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 13 CGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEIT 72
CG V+DS+ L + Y+ + +++ + INTA A R+ + V PLP +
Sbjct: 937 CGSVAVFDSVMNGLRKAIYNHRTATMESTDLIINTAFAERRIMLDVFMTPKPLPCNKPTI 996
Query: 73 P 73
P
Sbjct: 997 P 997
>gi|302872951|ref|YP_003841584.1| Beta-glucosidase [Clostridium cellulovorans 743B]
gi|307686534|ref|ZP_07628980.1| Beta-glucosidase [Clostridium cellulovorans 743B]
gi|302575808|gb|ADL49820.1| Beta-glucosidase [Clostridium cellulovorans 743B]
Length = 965
Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 34 NSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVW 93
N+GNID+DE AI+ + R ++ L + I + G +KTV ++++D +W
Sbjct: 737 NTGNIDSDEVAQLYVSAIKSRIVRPIR---ELKGFERINIKAGEKKTVNFKVKVEDLAIW 793
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040673|gb|ACT57469.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 109
Score = 171 bits (432), Expect = 3e-41, Method: Composition-based stats.
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ
Sbjct: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
Query: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ
Sbjct: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
>gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040680|gb|ACT57476.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 304
Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 18/109 (16%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
P++ W IFYS + +N S D N+ DI+TAIA+RK RVLQ
Sbjct: 84 FPKNTWCIFYS----------TERLINHSKRDSNN--------DIHTAIAVRKKNVRVLQ 125
Query: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
SYPL ++ R GNR+ VELL+EI+ +K+W+L++HLKS C + ++
Sbjct: 126 QSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLE 174
>gi|315122019|ref|YP_004062508.1| hypothetical protein CKC_01345 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495421|gb|ADR52020.1| hypothetical protein CKC_01345 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 315
Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 25/109 (22%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
PED W I YSG D+DE ++TAI RK VL+
Sbjct: 99 FPEDTWEILYSGN-------------------------DSDEHTVHTAIVARKGTVHVLE 133
Query: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
SY ++ + G R++VE+L E++ K+WLL++HLKS C V ++
Sbjct: 134 KSYLSMDTNKLDSKAGKRRSVEILFEVNGIKIWLLDIHLKSFCFVDSLK 182
>gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040474|gb|ACT57270.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 231
Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 25/109 (22%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
P DKW I YSG +TD+ ++TAI IRK +LQ
Sbjct: 67 FPNDKWDILYSGS-------------------------NTDKHAMHTAIVIRKGAIHLLQ 101
Query: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
SY + + + G R+ VE+L E+D +K+WLL++HLKS C + I+
Sbjct: 102 KSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIE 150
>gi|88860700|ref|ZP_01135337.1| hypothetical protein PTD2_05565 [Pseudoalteromonas tunicata D2]
gi|88817295|gb|EAR27113.1| hypothetical protein PTD2_05565 [Pseudoalteromonas tunicata D2]
Length = 316
Score = 39.5 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 26/113 (23%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
PED+W I S + V+ + SGN T + A A+RK
Sbjct: 102 FPEDQWQIIISKRADSEVYSCRE-----------SGNTSTQQK---VAFAVRK------- 140
Query: 61 VSYPLPAPQEITPRM----GNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
S P+ G R + + ++ D +LNVHLKS C V +
Sbjct: 141 -SIPVLNTHHYDELALGLNGLRYGLSVTVDTADGATEVLNVHLKSGCFVDDYE 192
>gi|190892922|ref|YP_001979464.1| hypothetical protein RHECIAT_CH0003338 [Rhizobium etli CIAT 652]
gi|190698201|gb|ACE92286.1| hypothetical protein RHECIAT_CH0003338 [Rhizobium etli CIAT 652]
Length = 357
Score = 36.8 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 33 DNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGN-----RKTVELLIEI 87
+NS + + D DI TAIA +K + ++ +V P + + R V + I+
Sbjct: 97 NNSSHCNEDIDDIFTAIAYKKSLGQLTEVQVPQLSVMHTSECANETPRPVRGGVGIQIQR 156
Query: 88 DDQKVWLLNVHLKSSC 103
D++ + +L+VHLK+SC
Sbjct: 157 DNETIVVLSVHLKASC 172
>gi|300691230|ref|YP_003752225.1| exopolyphosphatase [Ralstonia solanacearum PSI07]
gi|299078290|emb|CBJ50938.1| exopolyphosphatase [Ralstonia solanacearum PSI07]
Length = 512
Score = 35.3 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 7 YIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLP 66
+I +G + GC++ S + +GN+ DE + A + +VL Y
Sbjct: 156 FIIGNGYKPKLMESLYIGCVSHSRHFFPNGNV--DEYAMKQAELAARREIQVLVQQYRTA 213
Query: 67 APQEITPRMGNRKTVELLIEIDD 89
+ G + + LIE++
Sbjct: 214 GWNQSVGSSGTARALAELIELNG 236
>gi|109896633|ref|YP_659888.1| endonuclease/exonuclease/phosphatase [Pseudoalteromonas atlantica
T6c]
gi|109698914|gb|ABG38834.1| Endonuclease/exonuclease/phosphatase [Pseudoalteromonas atlantica
T6c]
Length = 331
Score = 34.9 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
PE W + S +P ++ + + A AI+K ++ +
Sbjct: 122 FPESDWTLVLSARADSPAYECRESGFTSTQQK--------------VAFAIKKGISILQV 167
Query: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVK 106
Q+I R G TV+ + D +LNVHLKS C V
Sbjct: 168 QQNAQLGLQKIGLRFGLAVTVDTPLGPTD----ILNVHLKSGCFVD 209
>gi|148982124|ref|ZP_01816600.1| hypothetical protein VSWAT3_19371 [Vibrionales bacterium SWAT-3]
gi|145960657|gb|EDK26003.1| hypothetical protein VSWAT3_19371 [Vibrionales bacterium SWAT-3]
Length = 291
Score = 34.5 bits (77), Expect = 4.6, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 35 SGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWL 94
+GN E + T A+RK VA +PL E T R ++IE + + + +
Sbjct: 97 NGNHQFKEVNQYTGFAVRKGVALTDYADFPL----ETTSNSKLRFASYIVIETETKPIHM 152
Query: 95 LNVHLKSSC 103
L+VHLK+ C
Sbjct: 153 LSVHLKAGC 161
>gi|195494443|ref|XP_002094842.1| GE19991 [Drosophila yakuba]
gi|194180943|gb|EDW94554.1| GE19991 [Drosophila yakuba]
Length = 262
Score = 34.5 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 45 INTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLN 96
+NTA R+++A ++ SY AP++ R+G R + L+E+ ++ W L+
Sbjct: 176 VNTA---REEIASCMEKSYLKMAPKQAAQRLGLRPGSKELLELASKRQWCLD 224
>gi|241663305|ref|YP_002981665.1| Ppx/GppA phosphatase [Ralstonia pickettii 12D]
gi|240865332|gb|ACS62993.1| Ppx/GppA phosphatase [Ralstonia pickettii 12D]
Length = 512
Score = 34.1 bits (76), Expect = 5.9, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 7 YIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLP 66
+I +G + GC++ S + +GN+ DE + A + +VL Y
Sbjct: 156 FIIGNGYKPKLMESLYIGCVSHSRHFFPNGNV--DEYAMKQAELAARREIQVLVQQYRTA 213
Query: 67 APQEITPRMGNRKTVELLIEIDD 89
+ G + + LIE++
Sbjct: 214 GWTQAVGSSGTARALAELIELNG 236
>gi|187929097|ref|YP_001899584.1| Ppx/GppA phosphatase [Ralstonia pickettii 12J]
gi|309782480|ref|ZP_07677204.1| exopolyphosphatase [Ralstonia sp. 5_7_47FAA]
gi|187725987|gb|ACD27152.1| Ppx/GppA phosphatase [Ralstonia pickettii 12J]
gi|308918817|gb|EFP64490.1| exopolyphosphatase [Ralstonia sp. 5_7_47FAA]
Length = 512
Score = 34.1 bits (76), Expect = 5.9, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 7 YIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLP 66
+I +G + GC++ S + +GN+ DE + A + +VL Y
Sbjct: 156 FIIGNGYKPKLMESLYIGCVSHSRHFFPNGNV--DEYAMKQAELAARREIQVLVQQYRTA 213
Query: 67 APQEITPRMGNRKTVELLIEIDD 89
+ G + + LIE++
Sbjct: 214 GWTQAVGSSGTARALAELIELNG 236
>gi|221134816|ref|ZP_03561119.1| endonuclease/exonuclease/phosphatase [Glaciecola sp. HTCC2999]
Length = 321
Score = 34.1 bits (76), Expect = 6.6, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 18/107 (16%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
P D W + S P DS S + I A A++ +
Sbjct: 107 FPTDTWQVLMS-----PRPDSETYECRGSGRESTQQKI---------AYAVKNGININSV 152
Query: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKK 107
G R +EL I+ + + LLNVH+KS C V
Sbjct: 153 KGLSELGLNN----PGLRYGLELTIQSELGAIKLLNVHMKSGCFVDN 195
>gi|300703825|ref|YP_003745427.1| exopolyphosphatase [Ralstonia solanacearum CFBP2957]
gi|299071488|emb|CBJ42810.1| exopolyphosphatase [Ralstonia solanacearum CFBP2957]
Length = 512
Score = 34.1 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 7 YIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLP 66
+I +G + GC++ S + +GN+ D+ + A + +VL Y
Sbjct: 156 FIIGNGYKPKLMESLYIGCVSHSRHFFPNGNV--DDYAMKQAELAARREIQVLVQQYRTA 213
Query: 67 APQEITPRMGNRKTVELLIEIDD 89
+ G + + LIE++
Sbjct: 214 GWNQSVGSSGTARALAELIELNG 236
>gi|207742917|ref|YP_002259309.1| exopolyphosphatase protein [Ralstonia solanacearum IPO1609]
gi|206594312|emb|CAQ61239.1| exopolyphosphatase protein [Ralstonia solanacearum IPO1609]
Length = 500
Score = 34.1 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 7 YIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLP 66
+I +G + GC++ S + +GN+ D+ + A + +VL Y
Sbjct: 144 FIIGNGYKPKLMESLYIGCVSHSRHFFPNGNV--DDYAMKQAELAARREIQVLVQQYRTA 201
Query: 67 APQEITPRMGNRKTVELLIEIDD 89
+ G + + LIE++
Sbjct: 202 GWNQSVGSSGTARALAELIELNG 224
>gi|207724007|ref|YP_002254405.1| exopolyphosphatase protein [Ralstonia solanacearum MolK2]
gi|206589215|emb|CAQ36177.1| exopolyphosphatase protein [Ralstonia solanacearum MolK2]
Length = 500
Score = 34.1 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 7 YIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLP 66
+I +G + GC++ S + +GN+ D+ + A + +VL Y
Sbjct: 144 FIIGNGYKPKLMESLYIGCVSHSRHFFPNGNV--DDYAMKQAELAARREIQVLVQQYRTA 201
Query: 67 APQEITPRMGNRKTVELLIEIDD 89
+ G + + LIE++
Sbjct: 202 GWNQSVGSSGTARALAELIELNG 224
>gi|83747751|ref|ZP_00944785.1| Exopolyphosphatase [Ralstonia solanacearum UW551]
gi|83725523|gb|EAP72667.1| Exopolyphosphatase [Ralstonia solanacearum UW551]
Length = 512
Score = 34.1 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 7 YIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLP 66
+I +G + GC++ S + +GN+ D+ + A + +VL Y
Sbjct: 156 FIIGNGYKPKLMESLYIGCVSHSRHFFPNGNV--DDYAMKQAELAARREIQVLVQQYRTA 213
Query: 67 APQEITPRMGNRKTVELLIEIDD 89
+ G + + LIE++
Sbjct: 214 GWNQSVGSSGTARALAELIELNG 236
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.314 0.114 0.319
Lambda K H
0.267 0.0354 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,734,188,005
Number of Sequences: 14124377
Number of extensions: 52861061
Number of successful extensions: 141138
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 141108
Number of HSP's gapped (non-prelim): 39
length of query: 109
length of database: 4,842,793,630
effective HSP length: 77
effective length of query: 32
effective length of database: 3,755,216,601
effective search space: 120166931232
effective search space used: 120166931232
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.7 bits)