BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780996|ref|YP_003065409.1| hypothetical protein
CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62]
         (109 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 109

 Score =  227 bits (579), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
           MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ
Sbjct: 1   MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60

Query: 61  VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
           VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ
Sbjct: 61  VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109


>gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 304

 Score = 82.4 bits (202), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 18/109 (16%)

Query: 1   MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
            P++ W IFYS           +  +N S  D N+        DI+TAIA+RK   RVLQ
Sbjct: 84  FPKNTWCIFYS----------TERLINHSKRDSNN--------DIHTAIAVRKKNVRVLQ 125

Query: 61  VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
            SYPL   ++   R GNR+ VELL+EI+ +K+W+L++HLKS C +  ++
Sbjct: 126 QSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLE 174


>gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 231

 Score = 68.6 bits (166), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 27/110 (24%)

Query: 1   MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
            P DKW I YSG                          +TD+  ++TAI IRK    +LQ
Sbjct: 67  FPNDKWDILYSGS-------------------------NTDKHAMHTAIVIRKGAIHLLQ 101

Query: 61  VSYPLPAPQE-ITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
            SY LP   E +  + G R+ VE+L E+D +K+WLL++HLKS C +  I+
Sbjct: 102 KSY-LPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIE 150


>gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 431

 Score = 22.3 bits (46), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)

Query: 71  ITPRMGNRKTVELLIEIDDQKVWLLNVHLKSS 102
           I PRM    T + LIE+D    WL     +SS
Sbjct: 401 IRPRM----TFQELIELDSIPAWLQKTPKQSS 428


>gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 294

 Score = 20.8 bits (42), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 2   PEDKWYIFYSGC 13
           PE +W++   GC
Sbjct: 182 PEKRWFVTSEGC 193


>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1576

 Score = 20.4 bits (41), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 33   DNSGNIDTDESDINTAIAI 51
            DNSG ++  + ++N  IA+
Sbjct: 1136 DNSGGVNCSDLEVNIKIAL 1154


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,331
Number of Sequences: 1233
Number of extensions: 2605
Number of successful extensions: 9
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 109
length of database: 328,796
effective HSP length: 62
effective length of query: 47
effective length of database: 252,350
effective search space: 11860450
effective search space used: 11860450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)