Query gi|254780997|ref|YP_003065410.1| hypothetical protein CLIBASIA_04490 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 00:21:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780997.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vyo_A ECU11_0510, chitooligos 12.2 38 0.0016 14.7 0.0 34 17-50 220-253 (254)
2 3n0r_A Response regulator; sig 11.6 79 0.0033 13.0 3.1 24 12-35 37-60 (286)
3 2dt7_A Splicing factor 3A subu 9.7 70 0.0029 13.3 0.7 10 17-26 8-17 (38)
4 3cla_A Type III chloramphenico 8.2 98 0.0041 12.5 0.9 17 60-76 48-64 (213)
5 1unl_D Cyclin-dependent kinase 7.8 77 0.0032 13.0 0.3 18 28-45 75-93 (208)
6 2q9r_A Protein of unknown func 7.2 1.2E+02 0.0051 12.0 3.6 25 39-63 14-38 (200)
7 3f7c_A Protein of unknown func 6.1 1.4E+02 0.0058 11.7 3.6 25 39-63 13-37 (200)
8 2ph7_A Uncharacterized protein 5.6 1.4E+02 0.0058 11.6 0.6 10 14-23 34-43 (246)
9 1ng7_A Poliovirus 3A-N, genome 5.5 1.5E+02 0.0061 11.5 0.7 6 31-36 25-30 (60)
10 1xsv_A Hypothetical UPF0122 pr 5.5 1.5E+02 0.0063 11.4 3.4 24 27-50 13-36 (113)
No 1
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}
Probab=12.18 E-value=38 Score=14.75 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=24.5
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 4580144899999999975342087389999999
Q gi|254780997|r 17 IGNPFSGFYAIRFSLLRSVDQSLLPPWQQFLFYL 50 (78)
Q Consensus 17 ignpfsgfyairfsllrsvdqsllppwqqflfyl 50 (78)
-+.|-..-.+.+.+..+++-.+.+|+|++.+--+
T Consensus 220 ~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (254)
T 2vyo_A 220 KGAPGDPELSLRGKGVESIGKGFLPFFLMMLVRL 253 (254)
T ss_dssp C---------------------------------
T ss_pred CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHH
T ss_conf 7899999634466416676305235899898631
No 2
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides}
Probab=11.64 E-value=79 Score=12.99 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=17.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 898764580144899999999975
Q gi|254780997|r 12 VLLNLIGNPFSGFYAIRFSLLRSV 35 (78)
Q Consensus 12 vllnlignpfsgfyairfsllrsv 35 (78)
++.||+||.-+|--.++-++.+.+
T Consensus 37 il~nLvGNA~~Gd~~v~~~Le~l~ 60 (286)
T 3n0r_A 37 YARALTGDQATGDHYVRVALEALA 60 (286)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999984682304799999999995
No 3
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.69 E-value=70 Score=13.27 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=8.2
Q ss_pred HCCCHHHHHH
Q ss_conf 4580144899
Q gi|254780997|r 17 IGNPFSGFYA 26 (78)
Q Consensus 17 ignpfsgfya 26 (78)
-||||.-||.
T Consensus 8 ~~~~F~EFY~ 17 (38)
T 2dt7_A 8 GPNEFAEFYN 17 (38)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
T ss_conf 8864999999
No 4
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=8.15 E-value=98 Score=12.48 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 98889999999752258
Q gi|254780997|r 60 ISFFPFLIDAFALGLQD 76 (78)
Q Consensus 60 isffpflidafalglqd 76 (78)
+||+|+++-|.+..+++
T Consensus 48 ~sf~~~~l~a~~~Al~~ 64 (213)
T 3cla_A 48 YKFYPVMIYLIAQAVNQ 64 (213)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 98589999999999996
No 5
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegenerative diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D* 1h4l_D
Probab=7.82 E-value=77 Score=13.04 Aligned_cols=18 Identities=56% Similarity=0.798 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHCC-CCHHH
Q ss_conf 9999997534208-73899
Q gi|254780997|r 28 RFSLLRSVDQSLL-PPWQQ 45 (78)
Q Consensus 28 rfsllrsvdqsll-ppwqq 45 (78)
-.--+|+||.||| --||.
T Consensus 75 ~V~WlR~VDRSLLLQGWQD 93 (208)
T 1unl_D 75 PVLWLRSVDRSLLLQGWQD 93 (208)
T ss_dssp HHHHHHHHHHHHHHTTSCS
T ss_pred EEHHHHHHHHHHHHHHHHH
T ss_conf 1221875149998710013
No 6
>2q9r_A Protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.91A {Shewanella baltica OS155}
Probab=7.17 E-value=1.2e+02 Score=11.98 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0873899999999999999999888
Q gi|254780997|r 39 LLPPWQQFLFYLLPVAVLVPFISFF 63 (78)
Q Consensus 39 llppwqqflfyllpvavlvpfisff 63 (78)
-|+||||..|-.--..-..|-...|
T Consensus 14 ~L~~wq~~~F~aaLcERM~PNY~lF 38 (200)
T 2q9r_A 14 ALTLPQKQLFATALCQRMLPNYQLF 38 (200)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 5775799999999999806149999
No 7
>3f7c_A Protein of unknown function (DUF416); YP_958225.1, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 2.00A {Marinobacter aquaeolei VT8}
Probab=6.07 E-value=1.4e+02 Score=11.65 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0873899999999999999999888
Q gi|254780997|r 39 LLPPWQQFLFYLLPVAVLVPFISFF 63 (78)
Q Consensus 39 llppwqqflfyllpvavlvpfisff 63 (78)
-|++|||..|-.--..-..|-...|
T Consensus 13 ~L~~wQ~~~F~aaLcERM~PNY~lF 37 (200)
T 3f7c_A 13 QLQGWRECAFLLALAERSFPNYALF 37 (200)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 6754789999999999843029999
No 8
>2ph7_A Uncharacterized protein AF_2093; structural genomics, southeast collaboratory for structural genomics, secsg; 2.40A {Archaeoglobus fulgidus dsm 4304}
Probab=5.63 E-value=1.4e+02 Score=11.64 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=4.1
Q ss_pred HHHHCCCHHH
Q ss_conf 8764580144
Q gi|254780997|r 14 LNLIGNPFSG 23 (78)
Q Consensus 14 lnlignpfsg 23 (78)
+.+||.-|.|
T Consensus 34 ~~~~~s~~~G 43 (246)
T 2ph7_A 34 LKIMGARLVG 43 (246)
T ss_dssp HHHHGGGGGG
T ss_pred HHHHHHHHCC
T ss_conf 9999988638
No 9
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=5.49 E-value=1.5e+02 Score=11.52 Aligned_cols=6 Identities=67% Similarity=1.038 Sum_probs=0.0
Q ss_pred HHHHHH
Q ss_conf 999753
Q gi|254780997|r 31 LLRSVD 36 (78)
Q Consensus 31 llrsvd 36 (78)
||+|||
T Consensus 25 LL~SVD 30 (60)
T 1ng7_A 25 LLQAVD 30 (60)
T ss_dssp HHHHHC
T ss_pred HHHHCC
T ss_conf 998638
No 10
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=5.47 E-value=1.5e+02 Score=11.45 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999999975342087389999999
Q gi|254780997|r 27 IRFSLLRSVDQSLLPPWQQFLFYL 50 (78)
Q Consensus 27 irfsllrsvdqsllppwqqflfyl 50 (78)
+|.+.|-..-+.+||+-|+-.+.+
T Consensus 13 ~~~~~L~d~y~~lLpe~qR~v~~l 36 (113)
T 1xsv_A 13 LRMNYLFDFYQSLLTNKQRNYLEL 36 (113)
T ss_dssp HHHHHHHHHHGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999999999986699999999999
Done!