RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780997|ref|YP_003065410.1| hypothetical protein
CLIBASIA_04490 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>gnl|CDD|163551 TIGR03839, termin_org_P1, adhesin P1.  Members of this protein family
            are the major adhesin of the Mycoplasma terminal
            organelle. The protein is called adhesin P1, cytadhesin
            P1, P140, attachment protein, and MgPa, with locus names
            MG191 in Mycoplasma genitalium and MPN141 in M.
            pneumoniae. A conserved C-terminal region is shared by
            additional paralogs in M. pneumoniae and M.
            gallisepticum, as well as by the member of this family.
          Length = 1425

 Score = 29.7 bits (66), Expect = 0.18
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 3    NQILIDRSVVLLNLIGNPFSGFYAIRFSLLRSVDQSLLPPWQQFLFYLLPVAVLVPFISF 62
             Q L  R      +   P  G +           Q+   P+ Q+  Y+LP+A+ VP +  
Sbjct: 1312 RQTLGLRLEFNDFIKLLPQDGEFVPVLQASSVGPQTEFTPFNQWPDYVLPLAITVPIV-- 1369

Query: 63   FPFLIDAFALGL 74
               +  +  LGL
Sbjct: 1370 --VIALSVTLGL 1379


>gnl|CDD|149562 pfam08552, Kei1, Inositolphosphorylceramide synthase subunit
          Kei1.  Kei1 is a subunit of Saccharomyces cerevisiae
          inositol phosphorylceramide (IPC) synthase. It is
          localized to the Golgi and is cleaved by the late Golgi
          processing endopeptidase Kex2. Kei1 is essential for
          both the activity and the Golgi localization of IPC
          synthase.
          Length = 178

 Score = 28.4 bits (64), Expect = 0.40
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 10 SVVLLNLIGNPFSGFYAIRFSLLRSVDQSLLPPWQQFLFYLLPVAVLVPFISFFP 64
           ++LL+ I N  SG Y I  +L      S      Q+L YL  V  L+ + S  P
Sbjct: 14 ELILLSAIFNKASGLYGI-LALFTGHPLSFW----QWLMYLYSVLTLIVYASGLP 63


>gnl|CDD|166325 PLN02684, PLN02684, Probable galactinol--sucrose
           galactosyltransferase.
          Length = 750

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 47  LFYLLPVAVLVPFISFFPF-LIDAFALG 73
           +F + P+  L P  SF P  LI+ +  G
Sbjct: 648 IFTVTPIKHLAPGFSFAPLGLINMYNAG 675


>gnl|CDD|152464 pfam12029, DUF3516, Domain of unknown function (DUF3516).  This
           presumed domain is functionally uncharacterized. This
           domain is found in bacteria. This domain is typically
           between 460 to 473 amino acids in length. This domain is
           found associated with pfam00270, pfam00271.
          Length = 462

 Score = 24.6 bits (54), Expect = 5.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 31  LLRSVDQSLLPPWQQ 45
           L+R VD SLL  W+Q
Sbjct: 305 LVRQVDSSLLDEWEQ 319


>gnl|CDD|183017 PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase;
           Provisional.
          Length = 575

 Score = 24.6 bits (54), Expect = 6.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 19  NPFSGFYAIRFSLLR 33
           NPF G+ AIR ++ R
Sbjct: 352 NPFLGWRAIRIAMDR 366


>gnl|CDD|177929 PLN02292, PLN02292, ferric-chelate reductase.
          Length = 702

 Score = 24.1 bits (52), Expect = 8.0
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)

Query: 47  LFYLLPVAV---LVPFISFFPFLIDAFALGLQ 75
           LF++  V +   L+ F  F+ FL+D F   LQ
Sbjct: 291 LFFVFHVGISFALISFPGFYIFLVDRFLRFLQ 322


>gnl|CDD|178216 PLN02606, PLN02606, palmitoyl-protein thioesterase.
          Length = 306

 Score = 24.2 bits (52), Expect = 8.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 33 RSVDQSLLPPWQQFLFYLLPVAVLVPFISFFPF 65
          +S  +S L       F+ +PV++ VPF+ F  F
Sbjct: 3  KSFQRSALLVTLSLFFFSIPVSLSVPFVLFHGF 35


>gnl|CDD|151683 pfam11241, DUF3043, Protein of unknown function (DUF3043).  Some
           members in this family of proteins with unknown function
           are annotated as membrane proteins. This cannot be
           confirmed.
          Length = 168

 Score = 23.8 bits (52), Expect = 9.9
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 18/45 (40%)

Query: 49  YLLPVAVLVPFISFFP------------------FLIDAFALGLQ 75
           + +PVA++V  +   P                   +ID   LG +
Sbjct: 80  FFMPVALVVLVLMLVPNPALQLIASLAMLVLILVMVIDGILLGRR 124


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.335    0.152    0.475 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,391,400
Number of extensions: 77466
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 45
Length of query: 78
Length of database: 5,994,473
Length adjustment: 48
Effective length of query: 30
Effective length of database: 4,957,289
Effective search space: 148718670
Effective search space used: 148718670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.6 bits)