HHsearch alignment for GI: 254780998 and conserved domain: TIGR03419
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=95.85 E-value=0.18 Score=30.17 Aligned_cols=114 Identities=9% Similarity=0.056 Sum_probs=79.2
Q ss_pred HHHHHHHHCC---CCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9999985089---9995686815502265601678873046545488799994162699999999999997599889998
Q gi|254780998|r 23 YLIELGKKLP---LFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEIL 99 (146)
Q Consensus 23 ~Li~lgk~l~---~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~eI~ 99 (146)
T Consensus 4 ~ileh~~~Prn~G~l~~~~~~~~~~np~CGD~i~i~l~i~~~~I~--di~F~~~G-Cais~AsaS~~~e~i~Gk~l~ea~ 80 (121)
T TIGR03419 4 KVMDHFMNPRNVGEIENADGVGEVGNPKCGDIMKIFLKVEDDIIK--DVKFKTFG-CGAAIASSSMATEMIKGKTLEEAW 80 (121)
T ss_pred HHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCEE--EEEEEEEC-CHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 899987697889989999967885799975189999998899678--89999655-588999999999998499499998
Q ss_pred HCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0798999987090431694289999999999999999999633
Q gi|254780998|r 100 KMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEYLNVH 142 (146)
Q Consensus 100 ~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~l~~~ 142 (146)
T Consensus 81 ~i~~~~i~~~l~---~lpp~r~~CA~La~~Al~~Al~~y~~k~ 120 (121)
T TIGR03419 81 ELTNKAVAEALD---GLPPVKMHCSVLAEEAIHKAINDYREKN 120 (121)
T ss_pred HCCHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 635489999975---9993116699999999999999998726