Query gi|254780998|ref|YP_003065411.1| hypothetical protein CLIBASIA_04495 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 146
No_of_seqs 106 out of 928
Neff 6.3
Searched_HMMs 33803
Date Wed Jun 1 20:12:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780998.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3g0m_A Cysteine desulfuration 100.0 0 0 307.0 16.1 132 3-138 9-140 (141)
2 >1wlo_A SUFE protein; structur 100.0 3E-41 1.4E-45 277.9 9.3 134 1-141 1-136 (136)
3 >1ni7_A ER75, hypothetical pro 99.9 9E-27 2.7E-31 187.5 12.6 97 3-143 16-112 (115)
4 >1ni7_A ER75, hypothetical pro 99.0 2.4E-11 7E-16 91.4 0.3 40 33-76 1-40 (40)
5 >1q48_A ISCU, NIFU-like protei 85.2 3 8.9E-05 22.1 9.6 92 46-143 35-126 (134)
6 >1wfz_A Nitrogen fixation clus 83.7 3.5 0.0001 21.7 10.7 93 44-143 29-122 (130)
7 >2z7e_A ISCU protein, NIFU-lik 81.8 4.1 0.00012 21.3 7.2 117 21-141 6-125 (157)
8 >1xjs_A NIFU-like protein; SR1 74.8 6.6 0.0002 20.0 8.0 89 18-110 8-99 (147)
9 >1su0_B NIFU like protein ISCU 67.1 9.9 0.00029 18.9 10.3 117 19-139 8-143 (159)
10 >2qq4_A Iron-sulfur cluster bi 63.3 12 0.00034 18.5 9.6 109 21-133 9-135 (138)
11 >1gci_A Subtilisin; hydrolase, 62.2 7.4 0.00022 19.7 3.1 36 66-101 207-243 (269)
12 >2ixt_A 36KDA protease; serine 54.8 12 0.00035 18.4 3.1 36 66-101 242-278 (310)
13 >1r0r_E Subtilisin carlsberg; 53.1 13 0.00039 18.1 3.1 37 65-101 211-248 (274)
14 >2px6_A Thioesterase domain; t 46.1 22 0.00066 16.7 5.1 37 2-38 28-65 (85)
15 >3i6s_A Subtilisin-like protea 45.2 21 0.00062 16.9 3.1 35 67-101 283-318 (356)
16 >1sh7_A Extracellular subtilis 45.0 21 0.00062 16.9 3.1 37 65-101 211-248 (284)
17 >1r6v_A Subtilisin-like serine 44.4 22 0.00064 16.8 3.1 36 66-101 277-313 (347)
18 >1y9z_A Alkaline serine protea 44.2 21 0.00063 16.8 3.0 34 68-101 214-248 (292)
19 >1p8j_A Furin precursor; proho 43.9 22 0.00066 16.7 3.1 36 66-101 253-289 (335)
20 >2id4_A Kexin; KEX2, kexin, fu 42.0 25 0.00074 16.4 3.1 37 65-101 263-300 (347)
21 >1to2_E Subtilisin BPN'; serin 41.9 25 0.00075 16.4 3.1 36 66-101 213-249 (281)
22 >2qtw_B Proprotein convertase 41.0 27 0.00079 16.2 3.1 38 64-101 224-262 (297)
23 >2iy9_A SUBA; toxin, shiga, pl 40.7 26 0.00077 16.3 3.0 36 66-101 264-300 (347)
24 >1gq2_A Malic enzyme; oxidored 39.7 28 0.00083 16.1 3.7 26 5-30 11-36 (53)
25 >2pwa_A Proteinase K; structur 38.5 21 0.00063 16.8 2.3 36 66-101 216-252 (279)
26 >1z19_A Integrase; protein-DNA 37.2 31 0.0009 15.8 4.2 58 79-138 27-84 (93)
27 >3f7m_A Alkaline serine protea 36.3 26 0.00077 16.3 2.5 37 65-101 216-253 (279)
28 >2b6n_A Proteinase K; S bindin 35.4 33 0.00096 15.7 3.1 38 64-101 185-223 (249)
29 >1fs1_B SKP1, cyclin A/CDK2-as 33.7 28 0.00082 16.1 2.2 30 72-101 55-88 (97)
30 >1gtk_A Porphobilinogen deamin 29.2 41 0.0012 15.0 3.2 24 44-72 19-42 (94)
31 >1o0s_A NAD-ME, NAD-dependent 28.3 43 0.0013 14.9 3.5 26 5-30 11-36 (54)
32 >1pdu_A DHR38, nuclear hormone 26.1 9 0.00027 19.2 -1.3 72 19-90 58-133 (244)
33 >1nex_A Centromere DNA-binding 25.0 43 0.0013 14.9 2.0 80 20-101 4-87 (91)
34 >2kiw_A INT protein; alpha, st 23.7 52 0.0015 14.4 4.7 63 74-138 20-82 (111)
35 >2hl7_A Cytochrome C-type biog 23.3 53 0.0016 14.3 3.5 37 72-112 38-75 (84)
36 >2kkp_A Phage integrase; SAM-l 23.0 28 0.00083 16.1 0.7 49 88-137 17-65 (91)
37 >3ecr_A Porphobilinogen deamin 22.8 54 0.0016 14.3 3.1 24 44-72 19-42 (123)
38 >3grl_A General vesicular tran 22.5 36 0.0011 15.4 1.2 97 4-115 80-182 (256)
39 >2key_A Putative phage integra 21.6 35 0.001 15.5 1.0 62 77-138 31-92 (112)
40 >1xf1_A C5A peptidase, SCP; hy 21.5 29 0.00087 16.0 0.6 36 66-101 267-303 (346)
No 1
>>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national institute of allergy and infectious diseases, niaid, hydrolase; 1.76A {Salmonella typhimurium LT2} PDB: 1mzg_A (A:)
Probab=100.00 E-value=0 Score=306.99 Aligned_cols=132 Identities=23% Similarity=0.487 Sum_probs=128.0
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHH
Q ss_conf 88999998750999899999999998508999956868155022656016788730465454887999941626999999
Q gi|254780998|r 3 PINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGL 82 (146)
Q Consensus 3 ~l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl 82 (146)
++++|+++|+.|+||++||+|||++||++||+|+++|+++|+|+||||+|||+++++ .||+++|+|||||+||||+
T Consensus 9 ~~~~i~~~f~~~~d~e~ry~~li~lgk~Lp~lp~~~k~~~~~V~GC~S~vWl~~e~~----~dg~~~f~~dSda~ivkGl 84 (141)
T 3g0m_A 9 DKEKLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNPQNTIHGCQSQVWIVMRRN----ANGIIELQGDSDAAIVKGL 84 (141)
T ss_dssp CHHHHHHHHHTCCSHHHHHHHHHHHHHTSCCCCGGGCSGGGBCCSSSSCEEEEEEEC----TTSBEEEEEEESSHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEEEEEEEC----CCCEEEEEECCCCHHHHHH
T ss_conf 899999998848999999999999883388999477582151888734746789986----8987999755714999999
Q ss_pred HHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997599889998079899998709043169428999999999999999999
Q gi|254780998|r 83 LYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEY 138 (146)
Q Consensus 83 ~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~ 138 (146)
++||+.+|||+||+||+++||.+||+++||.+||||+|.||+.+|+++||++|+++
T Consensus 85 ~ail~~~~~g~tp~eI~~~d~~~~~~~lGL~~~LspsR~NGl~~il~~ik~~a~~~ 140 (141)
T 3g0m_A 85 MAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTPSRSQGLEAMIRAIRAKAATL 140 (141)
T ss_dssp HHHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998699999998679899998848441058508789999999999999973
No 2
>>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus HB8} (A:)
Probab=100.00 E-value=3e-41 Score=277.88 Aligned_cols=134 Identities=17% Similarity=0.288 Sum_probs=123.5
Q ss_pred CCC--HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHH
Q ss_conf 988--899999875099989999999999850899995686815502265601678873046545488799994162699
Q gi|254780998|r 1 MIP--INDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQI 78 (146)
Q Consensus 1 M~~--l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~I 78 (146)
|++ +++|+++|+.++ |++||+|||++||++|++|++ ...|+|+||||+||+.++.++ +.++++|.|||||.|
T Consensus 1 mlp~~~~~i~~~f~~~~-~e~ry~~Li~lgk~Lp~l~~~--~k~~~V~GC~S~VWl~~~~~~---~~~~l~f~~dSda~i 74 (136)
T 1wlo_A 1 MVPPKLKQALELFKSLP-KELRSQVLLEYAAKVPPPPPG--VELERVHECQTPFFVHADVEG---GKVRLYFHVPDEAPT 74 (136)
T ss_dssp CCCHHHHHHHHHHHHSC-HHHHHHHHHHHHHTCCCCCSS--CCCEECTTSSSCCEEEEEEET---TEEEEEEECSSCCHH
T ss_pred CCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHCCCHHH--HHHHHHCCCEEEEEEEEEECC---CCCEEEEEECCHHHH
T ss_conf 99889999999998399-899999999989884302312--245450556010245677328---750589860612099
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999997599889998079899998709043169428999999999999999999963
Q gi|254780998|r 79 VCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEYLNV 141 (146)
Q Consensus 79 vkGl~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~l~~ 141 (146)
|||+++||+.+|||+||+||+++|+ +||+++||.+||||+|+||+.+|+++||.+|+++++.
T Consensus 75 vkGl~all~~~~~g~tp~ei~~~d~-~~~~~lgL~~~LspsR~nGl~~il~~ik~~a~~~~~~ 136 (136)
T 1wlo_A 75 VKAFAGLLREGLEGESPEAVLEVPP-GFYRGYGLEEFFTPLRLRGLEAALLRLQAQVRKALTS 136 (136)
T ss_dssp HHHHHHHHHHTTTTCCTTTTTSSCT-TTTTTTTSHHHHTHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHCCH-HHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9899999999991899999985999-9998868362157518999999999999999998539
No 3
>>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} (A:1-45,A:86-155)
Probab=99.94 E-value=9e-27 Score=187.54 Aligned_cols=97 Identities=30% Similarity=0.478 Sum_probs=92.2
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHH
Q ss_conf 88999998750999899999999998508999956868155022656016788730465454887999941626999999
Q gi|254780998|r 3 PINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGL 82 (146)
Q Consensus 3 ~l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl 82 (146)
|.++|.++|..++||+|||+|||++||+|| .|||||
T Consensus 16 t~~~~~~~~~~~~~w~~~y~~~i~lg~~l~--------------------------------------------~IVKGL 51 (115)
T 1ni7_A 16 TAETLRNTFAPLTQWEDKYRQLIMLGKQLP--------------------------------------------RIVRGL 51 (115)
T ss_dssp CHHHHHHHHTTCCSHHHHHHHHHHHHHHSC--------------------------------------------HHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--------------------------------------------HHHHHH
T ss_conf 899999999818999999999999885299--------------------------------------------999999
Q ss_pred HHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999759988999807989999870904316942899999999999999999996331
Q gi|254780998|r 83 LYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEYLNVHI 143 (146)
Q Consensus 83 ~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~l~~~~ 143 (146)
++||+.+|||++|+||+++||.+||+++||.+||||+|+||+.+|+++||.+|+++++++-
T Consensus 52 iALLl~~lsG~tpeeIl~~D~~dfl~~LGL~~~LSPsRsNGL~ami~rIK~~A~~~la~~a 112 (115)
T 1ni7_A 52 LAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAIIAATKQVLEHHH 112 (115)
T ss_dssp HHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999879999999857989999877973007811899999999999999999987411
No 4
>>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} (A:46-85)
Probab=99.05 E-value=2.4e-11 Score=91.35 Aligned_cols=40 Identities=23% Similarity=0.543 Sum_probs=36.3
Q ss_pred CCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHH
Q ss_conf 99956868155022656016788730465454887999941626
Q gi|254780998|r 33 LFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDS 76 (146)
Q Consensus 33 ~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda 76 (146)
.||+++|+++|+|+||||+|||.++.+ .+|+++|.||||.
T Consensus 1 alpe~~k~~~n~V~GC~SqVWl~~~~~----~dg~~~f~gDSDg 40 (40)
T 1ni7_A 1 ALPDELKAQAKEIAGCENRVWLGYTVA----ENGKMHFFGDSEG 40 (40)
T ss_dssp CCCHHHHHHSEEECSSSSCEEEECCCC----SSSCCCCEEEESS
T ss_pred CCCHHHHCHHHCCCCCCEEEEEEEEEC----CCCEEEEEECCCC
T ss_conf 999689555525167613688889861----6987999942652
No 5
>>1q48_A ISCU, NIFU-like protein; iron-sulfur cluster binding, three conserved Cys, 3 beta strands, 4 alpha helixes, NESG, structural genomics; NMR {Haemophilus influenzae} (A:)
Probab=85.16 E-value=3 Score=22.13 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=66.4
Q ss_pred CCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHH
Q ss_conf 26560167887304654548879999416269999999999999759988999807989999870904316942899999
Q gi|254780998|r 46 AGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLY 125 (146)
Q Consensus 46 ~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~ 125 (146)
+.|-..|=+...+++.+.. ..+.|.+..- .+...-+++++....|++.+|+..++...++..++ +.|+|.+--.
T Consensus 35 p~CGD~i~~~l~i~~~g~I-~d~~f~~~GC-~~~~Asas~~~~~~~Gk~~~ea~~i~~~~i~~~l~----~~p~r~~Ca~ 108 (134)
T 1q48_A 35 PACGDVMQLQIKVDDNGII-EDAKFKTYGC-GSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELE----LPPVKVHCSI 108 (134)
T ss_dssp TTTTEEEEEEEEECSSSBE-EEEEEECCSS-TTTHHHHHHHHHHHTTSBHHHHTTCCHHHHHHHHT----CCTTCTHHHH
T ss_pred CCCCCEEEEEEEECCCCEE-EEEEEEECCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC----CCCCCHHHHH
T ss_conf 8757289999984699838-8889983588-99999999999998599699999703999998743----7874006899
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999996331
Q gi|254780998|r 126 TIVNKIQDLTQEYLNVHI 143 (146)
Q Consensus 126 ~m~~~ik~~a~~~l~~~~ 143 (146)
-.+.-++...+.+.++.-
T Consensus 109 l~~~al~~al~~~~~~~~ 126 (134)
T 1q48_A 109 LAEDAIKAAIADYKAKQG 126 (134)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999749
No 6
>>1wfz_A Nitrogen fixation cluster-like; iron-sulfur cluster biosynthesis, three conserved Cys, structural genomics; NMR {Mus musculus} (A:)
Probab=83.65 E-value=3.5 Score=21.72 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=67.4
Q ss_pred HHCCCCEEEEEEEEECCC-CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHH
Q ss_conf 022656016788730465-4548879999416269999999999999759988999807989999870904316942899
Q gi|254780998|r 44 IVAGCMSKLWMVIEWENK-GDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMN 122 (146)
Q Consensus 44 ~V~GCqS~vWl~~~~~~~-~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~n 122 (146)
.=+.|=+++=+...+++. .. ..+.|.+..- .+...-++++++...|++.+|+..++...+++.+| +.|+|.+
T Consensus 29 ~n~~CGD~i~~~l~i~ed~~I--~d~~f~~~GC-~~~~Asas~l~e~i~Gkt~~e~~~i~~~~i~~~l~----~~~~R~~ 101 (130)
T 1wfz_A 29 GAPACGDVMKLQIQVDEKGKI--VDARFKTFGC-GSAIASSSLATEWVKGKTVEEALTIKNTDIAKELC----LPPVKLH 101 (130)
T ss_dssp EETTTTEEEEEEEEECSSSBE--EEEEEECCSC-HHHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHHT----CCGGGHH
T ss_pred CCCCCCCEEEEEEEECCCCEE--EEEEEEEECC-CHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHCC----CCCCHHH
T ss_conf 798878689999995479928--8999883088-35478999999998602468988506199998717----9952135
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999996331
Q gi|254780998|r 123 GLYTIVNKIQDLTQEYLNVHI 143 (146)
Q Consensus 123 Gl~~m~~~ik~~a~~~l~~~~ 143 (146)
=-.-.+.-++...+++.+.+-
T Consensus 102 Ca~l~~~al~~ai~~~~~~~~ 122 (130)
T 1wfz_A 102 CSMLAEDAIKAALADYKLKQE 122 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 899999999999999997443
No 7
>>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus} (A:)
Probab=81.81 E-value=4.1 Score=21.28 Aligned_cols=117 Identities=9% Similarity=0.035 Sum_probs=69.6
Q ss_pred HHHHHHHHHHCCC---CCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 9999999850899---9956868155022656016788730465454887999941626999999999999975998899
Q gi|254780998|r 21 YHYLIELGKKLPL---FPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISE 97 (146)
Q Consensus 21 y~~Li~lgk~l~~---l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~e 97 (146)
.+-|+++.+...- +++..-+-...-+-|-+.+=|...++.+.+.-.-+.|.+..= .|...-++++++...|++.+|
T Consensus 6 ~~~Ile~~~~P~~~g~l~~~~~~~~~~np~CGD~i~i~l~id~e~~~I~d~~f~~~GC-~i~~Asas~l~e~i~Gkti~e 84 (157)
T 2z7e_A 6 NEKVLDHFLNPRNVGVLEDANGVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTFGC-GSAIAVSSMLTEMVKGKPIQY 84 (157)
T ss_dssp HHHHHHHHHSCSSBSCCTTCSEEEEEEETTTTEEEEEEEEECTTTCBEEEEEEEEESC-TTHHHHHHHHHHHHTTSBHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCEEHHHEEEECCC-HHHHHHHHHHHHHHHHCCHHH
T ss_conf 9999999869577898999996888689998578999999816877530101243278-366789999999998066878
Q ss_pred HHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98079899998709043169428999999999999999999963
Q gi|254780998|r 98 ILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEYLNV 141 (146)
Q Consensus 98 I~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~l~~ 141 (146)
+..+.. .|+... ...+.|.|..-..-.+..++...+.|.++
T Consensus 85 a~~i~~-~~i~~~--~~~~~~~r~~Ca~l~~~al~~al~~y~~r 125 (157)
T 2z7e_A 85 ALNLTY-KDIFEE--LGGLPPQKIHCTNLGLETLHVAIKDYLMK 125 (157)
T ss_dssp HHHCCH-HHHHHH--HTCCCCSSCCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHCH-HHHHHH--HCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 773035-999999--66999751529999999999999999972
No 8
>>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} (A:)
Probab=74.77 E-value=6.6 Score=19.97 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=61.7
Q ss_pred HHHH-HHHHHHHHHCCCCC--HHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999-99999985089999--56868155022656016788730465454887999941626999999999999975998
Q gi|254780998|r 18 HDRY-HYLIELGKKLPLFP--KEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKK 94 (146)
Q Consensus 18 ~~ry-~~Li~lgk~l~~l~--e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t 94 (146)
.+.| +-|+++.+...... +..-.-...-+-|-..+.|...+++.... .+.|.+..= .|...-++++++.+.|+|
T Consensus 8 ~~~Y~~~Ile~~~~p~~~g~l~~~~~~~~~n~~CGD~i~i~l~i~~~~I~--d~~f~~~GC-~i~~Asas~l~~~~~Gkt 84 (147)
T 1xjs_A 8 DTLYRQVIMDHYKNPRNKGVLNDSIVVDMNNPTCGDRIRLTMKLDGDIVE--DAKFEGEGC-SISMASASMMTQAIKGKD 84 (147)
T ss_dssp HHHHHHHHHHHHHSCCCCCCCCSSEEEEEEETTTTEEEEEEEECCSSBCC--EEEEEEESS-HHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEEEEECCCEEE--EEEEEECCC-HHHHHHHHHHHHHHCCCC
T ss_conf 99999999999859688897999887420799986089999998388068--877674246-898999999999973898
Q ss_pred HHHHHHCCHHHHHHHH
Q ss_conf 8999807989999870
Q gi|254780998|r 95 ISEILKMDSLTILQHL 110 (146)
Q Consensus 95 ~~eI~~~d~~~f~~~l 110 (146)
.+|+..+. ..|+..+
T Consensus 85 i~ea~~l~-~~~~~~~ 99 (147)
T 1xjs_A 85 IETALSMS-KIFSDMM 99 (147)
T ss_dssp HHHHHHHH-HHHHHHH
T ss_pred HHHHHHHH-HHHHHHH
T ss_conf 99999999-9999986
No 9
>>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} (B:)
Probab=67.06 E-value=9.9 Score=18.90 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=77.6
Q ss_pred HHH-HHHHHHHHHCCCC--CHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 999-9999998508999--9568681550226560167887304654548879999416269999999999999759988
Q gi|254780998|r 19 DRY-HYLIELGKKLPLF--PKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKI 95 (146)
Q Consensus 19 ~ry-~~Li~lgk~l~~l--~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~ 95 (146)
+.| +.|+++.+..... .+..-.-...-..|-.++=+...+++....+ +.|.+..= .|...-++++++.+.|+|.
T Consensus 8 ~lY~~~il~~~~~p~~~g~le~~~~~~~~n~~CGD~i~i~l~i~~~~I~d--i~f~~~GC-~i~~ASas~l~e~i~gkt~ 84 (159)
T 1su0_B 8 HLYMAVVADHSKRPHHHGQLDGVEAVQLNNPTCGDVISLTVKFDEDKIED--IAFAGNGC-TISTASSSMMTDAVIGKSK 84 (159)
T ss_dssp HHHHHHHHHHHHSCSSBSCCTTCCCEEEECSSSCCEEEEEEEESSSSEEE--EEEEEECC-HHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCEEEE--EEEEECCC-HHHHHHHHHHHHHHCCCCH
T ss_conf 99999999997596889979999735336788777799999974883578--78885366-6889999999999828989
Q ss_pred HHHHHCCHHHHHHHH-CCHH---------------CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999807989999870-9043---------------1694289999999999999999999
Q gi|254780998|r 96 SEILKMDSLTILQHL-GLTE---------------NLSQKRMNGLYTIVNKIQDLTQEYL 139 (146)
Q Consensus 96 ~eI~~~d~~~f~~~l-gL~~---------------~Lt~~R~nGl~~m~~~ik~~a~~~l 139 (146)
.|+..+. ..|...+ |-.. ...|+|..-..--+.-++....+|.
T Consensus 85 ~ea~~i~-~~~~~~~~g~~~~~~~~~~~l~~l~~v~~~~~R~~Ca~L~~~al~~al~~~~ 143 (159)
T 1su0_B 85 EEALALA-DIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKEAIKRSA 143 (159)
T ss_dssp HHHHHHH-HHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999-9999987435677422236788740767686212899889999999999677
No 10
>>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus} (A:)
Probab=63.32 E-value=12 Score=18.46 Aligned_cols=109 Identities=11% Similarity=0.112 Sum_probs=70.2
Q ss_pred HHHHHHHHHHCCC---CCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 9999999850899---9956868155022656016788730465454887999941626999999999999975998899
Q gi|254780998|r 21 YHYLIELGKKLPL---FPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISE 97 (146)
Q Consensus 21 y~~Li~lgk~l~~---l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~e 97 (146)
-+.|+++.+...- +++...+-...-+.|-+.+=+...+++....| +.|.+..= .|...-+++++...-|+|.+|
T Consensus 9 ~~~Il~~~~~p~~~g~l~~~~~~~~~~n~~CGD~i~i~l~i~~~~I~d--~~f~~~GC-~i~~Asas~~~e~~~gkt~~e 85 (138)
T 2qq4_A 9 REILLDHYQSPRNFGVLPQATKQAGGMNPSCGDQVEVMVLLEGDTIAD--IRFQGQGC-AISTASASLMTEAVKGKKVAE 85 (138)
T ss_dssp HHHHHHHHHSCTTBSCCTTCSEEEEEECTTTCCEEEEEEEEETTEEEE--EEEEEECC-HHHHHHHHHHHHHHTTSBHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCEEEE--EEEEEECC-HHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999975979899899998165525789986899999973763688--78886143-899999999999870489999
Q ss_pred HHHCCHHHHHHHH-CCHH--------------CCCHHHHHHHHHHHHHHHH
Q ss_conf 9807989999870-9043--------------1694289999999999999
Q gi|254780998|r 98 ILKMDSLTILQHL-GLTE--------------NLSQKRMNGLYTIVNKIQD 133 (146)
Q Consensus 98 I~~~d~~~f~~~l-gL~~--------------~Lt~~R~nGl~~m~~~ik~ 133 (146)
+..+.. .|+..+ |-.+ .--|+|.+-..--+.-++.
T Consensus 86 a~~i~~-~~~~~~~~~~~~~~~~~~l~~l~~v~~~~~R~~Ca~L~~~al~~ 135 (138)
T 2qq4_A 86 ALELSR-KFQAMVVEGAPPDPTLGDLLALQGVAKLPARVKCATLAWHALEE 135 (138)
T ss_dssp HHHHHH-HHHHHHTTCCCCCGGGGGGGGGGGGGGCGGGHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999-99998756998612477898611444487235889639999999
No 11
>>1gci_A Subtilisin; hydrolase, serine protease, ultra-high resolution; 0.78A {Bacillus lentus} (A:)
Probab=62.19 E-value=7.4 Score=19.66 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=29.2
Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 87999941626-9999999999999759988999807
Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
.-..+.|.|-| ++|-|++|++...+...||.||.++
T Consensus 207 ~~~~~sGTS~AaP~VaG~aAli~~~~p~~t~~~v~~~ 243 (269)
T 1gci_A 207 TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNH 243 (269)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 3233698552579999999999987889999999999
No 12
>>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} (A:)
Probab=54.81 E-value=12 Score=18.38 Aligned_cols=36 Identities=11% Similarity=-0.047 Sum_probs=30.0
Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 87999941626-9999999999999759988999807
Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
....+.|.|-| ++|.|.++++...+...+|++|++.
T Consensus 242 ~~~~~sGTS~Aap~vaG~~Ali~~~~p~lt~~~i~~~ 278 (310)
T 2ixt_A 242 GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSN 278 (310)
T ss_dssp SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred CCEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 5101047520257999999999987889999999999
No 13
>>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} (E:)
Probab=53.13 E-value=13 Score=18.11 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=31.6
Q ss_pred CCEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 887999941626-9999999999999759988999807
Q gi|254780998|r 65 DPIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 65 ~~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
.....+.|.|-| ++|.|.++++...+...||++|.++
T Consensus 211 ~~~~~~~GTS~Aap~vaG~~Al~~~~~p~lt~~~i~~~ 248 (274)
T 1r0r_E 211 NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNR 248 (274)
T ss_dssp TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 98474378752218999999999987889999999999
No 14
>>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} PDB: 1xkt_A (A:156-240)
Probab=46.14 E-value=22 Score=16.71 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHH-HHHCCCCCHHH
Q ss_conf 88899999875099989999999999-85089999568
Q gi|254780998|r 2 IPINDIIEDMEMIEDLHDRYHYLIEL-GKKLPLFPKEY 38 (146)
Q Consensus 2 ~~l~~i~e~f~~~~d~~~ry~~Li~l-gk~l~~l~e~~ 38 (146)
+.-+++++.+-.+++|++|.+...++ -...|.++.+.
T Consensus 28 idy~kl~~~Ll~~~t~e~rl~~~~dlI~~~~~~~~re~ 65 (85)
T 2px6_A 28 MEHNRVLEALLPLKGLEERVAAAVDLIIKSHQGLDRQE 65 (85)
T ss_dssp CCHHHHHHHHTTSCSHHHHHHHHHHHHHHHCTTSCHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 77788999987502649999999997310234489999
No 15
>>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* (A:1-228,A:365-492)
Probab=45.15 E-value=21 Score=16.86 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=29.2
Q ss_pred EEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 7999941626-9999999999999759988999807
Q gi|254780998|r 67 IMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 67 ~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
.-.+.|.|-| ++|-|+++++.+.+-..++.+|+++
T Consensus 283 ~~~~~GTS~Aap~vag~~Ali~~~~p~~t~~~i~~~ 318 (356)
T 3i6s_A 283 YILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSA 318 (356)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 157427765554210089999977889999999999
No 16
>>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, calcium depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* (A:)
Probab=45.02 E-value=21 Score=16.87 Aligned_cols=37 Identities=8% Similarity=-0.048 Sum_probs=30.9
Q ss_pred CCEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 887999941626-9999999999999759988999807
Q gi|254780998|r 65 DPIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 65 ~~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
.....+.|.|-| ++|.|+++++...+...+|.+|..+
T Consensus 211 ~~~~~~~GTS~AaP~vsG~~Al~~s~~p~~s~~~vk~~ 248 (284)
T 1sh7_A 211 GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGL 248 (284)
T ss_dssp SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 96275068750368999999999988889999999999
No 17
>>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} (A:97-443)
Probab=44.40 E-value=22 Score=16.77 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=31.5
Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 87999941626-9999999999999759988999807
Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
+-..+.|.|-| ++|.|.++|+...+-..+|.+|.+.
T Consensus 277 ~~~~~sGTS~AaP~VaG~~AL~~~~~p~~t~~~i~~~ 313 (347)
T 1r6v_A 277 TYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKL 313 (347)
T ss_dssp CEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 3777468899899999999999997889999999999
No 18
>>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain, hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* (A:1-211,A:361-441)
Probab=44.20 E-value=21 Score=16.80 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=28.4
Q ss_pred EEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 999941626-9999999999999759988999807
Q gi|254780998|r 68 MIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 68 ~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
-...|.|-| ++|-|.++||.+.+-..+|.+|.++
T Consensus 214 ~~~sGTS~aap~vag~~al~~~~~p~~~~~~i~~~ 248 (292)
T 1y9z_A 214 EYYNGTSMATPHVSGVATLVWSYHPECSASQVRAA 248 (292)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 79826888689999999999987799999999999
No 19
>>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain, hydrolase; HET: DKA MAI NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} (A:1-335)
Probab=43.91 E-value=22 Score=16.70 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=30.0
Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 87999941626-9999999999999759988999807
Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
+.-.+.|.|-| ++|.|+++|+.+.+-+.+|.+|.++
T Consensus 253 ~~~~~~GTS~AaP~vaG~~ALi~~~~p~~t~~~v~~~ 289 (335)
T 1p8j_A 253 CTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHL 289 (335)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 1547687875216788999999977889789999999
No 20
>>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, subtilisin like protease, serine protease, hydrolase; HET: LYM NDG; 1.90A {Saccharomyces cerevisiae} (A:1-347)
Probab=41.97 E-value=25 Score=16.40 Aligned_cols=37 Identities=5% Similarity=0.028 Sum_probs=30.5
Q ss_pred CCEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 887999941626-9999999999999759988999807
Q gi|254780998|r 65 DPIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 65 ~~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
.+.-.+.|.|-| ++|-|.++|+...+-..++.+|..+
T Consensus 263 ~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~ 300 (347)
T 2id4_A 263 RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYL 300 (347)
T ss_dssp CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCHHCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 11112688763312102067888766321268999999
No 21
>>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} (E:)
Probab=41.91 E-value=25 Score=16.36 Aligned_cols=36 Identities=11% Similarity=0.023 Sum_probs=30.2
Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 87999941626-9999999999999759988999807
Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
....+.|.|-| ++|-|.++++...+...+|.+|.++
T Consensus 213 ~~~~~~GTS~Aap~vaG~~Al~~~~~p~lt~~~i~~~ 249 (281)
T 1to2_E 213 KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSS 249 (281)
T ss_dssp EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred EEEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 1687642111788999999999987879999999999
No 22
>>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholesterolemia, low density lipoprotein receptor, alternative splicing; HET: NAG; 1.90A {Homo sapiens} PDB: 3bps_A 3gcw_A 3gcx_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2w2o_A (B:1-297)
Probab=40.98 E-value=27 Score=16.21 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=32.2
Q ss_pred CCCEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 4887999941626-9999999999999759988999807
Q gi|254780998|r 64 QDPIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 64 ~~~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
......+.|.|-| ++|.|.++++...+-..+|.+|.++
T Consensus 224 ~~~~~~~sGTS~AaP~vaG~~All~s~~~~lt~~~i~~~ 262 (297)
T 2qtw_B 224 STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQR 262 (297)
T ss_dssp TTCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 991898279899899999999999986889999999999
No 23
>>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} (A:)
Probab=40.71 E-value=26 Score=16.26 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=30.3
Q ss_pred CEEEEEECCH-HHHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 8799994162-69999999999999759988999807
Q gi|254780998|r 66 PIMIFYAVSD-SQIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 66 ~~~~f~~dSd-a~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
+...+.|.|= |+.|.|.++++.+.+-..+|.||+++
T Consensus 264 ~~~~~~GTS~AaP~vaG~aAl~~s~~p~lt~~~vk~~ 300 (347)
T 2iy9_A 264 KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRT 300 (347)
T ss_dssp CEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 5202566640569999999999987889999999999
No 24
>>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} (A:34-86)
Probab=39.65 E-value=28 Score=16.08 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=21.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99999875099989999999999850
Q gi|254780998|r 5 NDIIEDMEMIEDLHDRYHYLIELGKK 30 (146)
Q Consensus 5 ~~i~e~f~~~~d~~~ry~~Li~lgk~ 30 (146)
+.+...|..++++-+||.||..+-..
T Consensus 11 ~r~~~~~~~~~~~l~Ky~yL~~L~~r 36 (53)
T 1gq2_A 11 YSILKNFERLTSDLDRYILLXSLQDR 36 (53)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999986279947999999999886
No 25
>>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} (A:)
Probab=38.47 E-value=21 Score=16.80 Aligned_cols=36 Identities=14% Similarity=0.025 Sum_probs=30.4
Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 87999941626-9999999999999759988999807
Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
....+.|.|-| ++|.|.+++++..+...+|.+|.+.
T Consensus 216 ~y~~~~GTS~AaP~vaG~~Al~~~~~p~~t~~~v~~~ 252 (279)
T 2pwa_A 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRYI 252 (279)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 1368985324899999999999871899879999999
No 26
>>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* (A:1-93)
Probab=37.21 E-value=31 Score=15.84 Aligned_cols=58 Identities=3% Similarity=-0.016 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999997599889998079899998709043169428999999999999999999
Q gi|254780998|r 79 VCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEY 138 (146)
Q Consensus 79 vkGl~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~ 138 (146)
-+..+.-+...+-..+..+|...|...|+.. +.+.++|+-.|...+.+..+-..|.+.
T Consensus 27 y~~~~~~~~~~~g~~~i~~it~~~i~~~~~~--~~~~~s~~t~~~~~~~l~~~f~~a~~~ 84 (93)
T 1z19_A 27 YXSKIKAIRRGLPDAPLEDITTKEIAAXLNG--YIDEGKAASAKLIRSTLSDAFREAIAE 84 (93)
T ss_dssp HHHHHHHHHHHSCSCBGGGCCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCHHHCCHHHHHHHHHH--HHHHCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999976999687999999999999--987205899999999888874244124
No 27
>>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A (A:)
Probab=36.33 E-value=26 Score=16.27 Aligned_cols=37 Identities=8% Similarity=-0.038 Sum_probs=30.7
Q ss_pred CCEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 887999941626-9999999999999759988999807
Q gi|254780998|r 65 DPIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 65 ~~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
....++.|.|-| ++|.|+++++...+...||.+|...
T Consensus 216 ~~~~~~~GTS~Atp~vaG~aAl~~~~~p~lt~~~i~~~ 253 (279)
T 3f7m_A 216 GRTNTISGTSMATPHIAGLAAYLFGLEGGSAGAMCGRI 253 (279)
T ss_dssp GCEEEECSHHHHHHHHHHHHHHHHHHTCCCTTTHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 30007888428899999999999866899869999999
No 28
>>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} (A:30-278)
Probab=35.43 E-value=33 Score=15.67 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=31.7
Q ss_pred CCCEEEEEECC-HHHHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 48879999416-269999999999999759988999807
Q gi|254780998|r 64 QDPIMIFYAVS-DSQIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 64 ~~~~~~f~~dS-da~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
......+.|.| -+++|.|.++++.+.+...+|.+|.++
T Consensus 185 ~~~~~~~sGTS~aap~vsG~~Al~~~~~p~ls~~~i~~~ 223 (249)
T 2b6n_A 185 NSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNL 223 (249)
T ss_dssp TTCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 222467665643889999999999987879999999999
No 29
>>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} (B:45-141)
Probab=33.67 E-value=28 Score=16.11 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=22.4
Q ss_pred ECCHHHHHHHHHHHHHHH----HCCCCHHHHHHC
Q ss_conf 416269999999999999----759988999807
Q gi|254780998|r 72 AVSDSQIVCGLLYIVKSI----YAHKKISEILKM 101 (146)
Q Consensus 72 ~dSda~IvkGl~~ll~~~----~~g~t~~eI~~~ 101 (146)
-.++-+=++||+-+.+.. ..|+||+||+++
T Consensus 55 ~AAnyL~I~~Lldl~c~~vA~~i~gKs~eeiR~~ 88 (97)
T 1fs1_B 55 LAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKT 88 (97)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9866226499999999999999819999999999
No 30
>>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} (A:220-313)
Probab=29.21 E-value=41 Score=15.02 Aligned_cols=24 Identities=17% Similarity=0.193 Sum_probs=17.7
Q ss_pred HHCCCCEEEEEEEEECCCCCCCCEEEEEE
Q ss_conf 02265601678873046545488799994
Q gi|254780998|r 44 IVAGCMSKLWMVIEWENKGDQDPIMIFYA 72 (146)
Q Consensus 44 ~V~GCqS~vWl~~~~~~~~~~~~~~~f~~ 72 (146)
+=-||++++-+.+++++ +++++++
T Consensus 19 L~GgC~~PIga~a~~~~-----~~l~l~~ 42 (94)
T 1gtk_A 19 LEGGCQVPIGSYAELID-----GEIWLRA 42 (94)
T ss_dssp HTCCTTSCEEEEEEEET-----TEEEEEE
T ss_pred HCCCCCCCEEEEEEEEC-----CEEEEEE
T ss_conf 47899986589999989-----9999999
No 31
>>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, malate dehydrogenase; HET: NAI; 2.00A {Ascaris suum} (A:70-123)
Probab=28.31 E-value=43 Score=14.93 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=21.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99999875099989999999999850
Q gi|254780998|r 5 NDIIEDMEMIEDLHDRYHYLIELGKK 30 (146)
Q Consensus 5 ~~i~e~f~~~~d~~~ry~~Li~lgk~ 30 (146)
..+...|..++++-+||.||..+-..
T Consensus 11 ~r~~~~~~~~~~~l~Ky~~L~~L~~~ 36 (54)
T 1o0s_A 11 YRVITKLREQPNDLARYIQLDGLQDR 36 (54)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999985379947999999999886
No 32
>>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} (A:)
Probab=26.06 E-value=9 Score=19.15 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHCCCCCHHHCC-HHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECC---HHHHHHHHHHHHHHHH
Q ss_conf 9999999998508999956868-1550226560167887304654548879999416---2699999999999997
Q gi|254780998|r 19 DRYHYLIELGKKLPLFPKEYMT-DQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVS---DSQIVCGLLYIVKSIY 90 (146)
Q Consensus 19 ~ry~~Li~lgk~l~~l~e~~k~-~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dS---da~IvkGl~~ll~~~~ 90 (146)
.....+|+++|++|.+.+=... .-.++++|-+.+|+..-.......++.+.+.... +.....|+..+....+
T Consensus 58 ~~l~~~v~waK~lP~F~~L~~~DQi~LLk~~~~El~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (244)
T 1pdu_A 58 SSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQCLRSFGEWLNDIM 133 (244)
T ss_dssp HHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHCCSSCSEEECTTSBEEEHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999886069781259989999999998999999999996667899588359961357999987999999999
No 33
>>1nex_A Centromere DNA-binding protein complex CBF3 subunit D; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, ligase, cell cycle; HET: TPO; 2.70A {Saccharomyces cerevisiae} (A:58-148)
Probab=25.03 E-value=43 Score=14.94 Aligned_cols=80 Identities=13% Similarity=0.007 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHH----HCCCCH
Q ss_conf 9999999985089999568681550226560167887304654548879999416269999999999999----759988
Q gi|254780998|r 20 RYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSI----YAHKKI 95 (146)
Q Consensus 20 ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~----~~g~t~ 95 (146)
-+..+++|-+....-|...-.+...-..+.-+-|=.-.++- +.+..+...--++-+=++||+.+.+.. ..|+||
T Consensus 4 ~L~kViewc~~H~~~~~~~~~~~~~~~~~~l~~wD~~F~~~--d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~ 81 (91)
T 1nex_A 4 VLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKV--DQEXLYEIILAANYLNIKPLLDAGCKVVAEXIRGRSP 81 (91)
T ss_dssp HHHHHHHHHHHTTTCCCC------------CCHHHHHHTCS--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999998400678865432112446410789999805--7999999999857508647999999999999849999
Q ss_pred HHHHHC
Q ss_conf 999807
Q gi|254780998|r 96 SEILKM 101 (146)
Q Consensus 96 ~eI~~~ 101 (146)
+||+++
T Consensus 82 eeiR~~ 87 (91)
T 1nex_A 82 EEIRRT 87 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 34
>>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435} (A:)
Probab=23.67 E-value=52 Score=14.40 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 62699999999999997599889998079899998709043169428999999999999999999
Q gi|254780998|r 74 SDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEY 138 (146)
Q Consensus 74 Sda~IvkGl~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~ 138 (146)
+-..-.+..+.-+...+.+.+..+|-.-+...|++. +...+++...|...+.+..+-..|.+.
T Consensus 20 ~T~~~~~~~~~~~~~~~g~~~i~~it~~~i~~~~~~--l~~~~s~~t~~~~~~~l~~~~~~a~~~ 82 (111)
T 2kiw_A 20 SSVRAREKAIQHAIERFNTKPIQTIKKHDYQRFVDD--ISAQYSKNYVDSIVASTNMIFKYAYDT 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCGGGCCHHHHHHHHHH--HHTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--HHHHCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999987892999359999999998--864403999998999999999999997
No 35
>>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa} (A:)
Probab=23.26 E-value=53 Score=14.35 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=29.5
Q ss_pred ECCHHHHHHHHHHHHHH-HHCCCCHHHHHHCCHHHHHHHHCC
Q ss_conf 41626999999999999-975998899980798999987090
Q gi|254780998|r 72 AVSDSQIVCGLLYIVKS-IYAHKKISEILKMDSLTILQHLGL 112 (146)
Q Consensus 72 ~dSda~IvkGl~~ll~~-~~~g~t~~eI~~~d~~~f~~~lgL 112 (146)
++|+|.|.+-|-..+.. +-.|+|.+||.++ |.+..|=
T Consensus 38 ~dSna~~A~dmR~~i~~~i~~G~sd~eI~~~----lv~RYG~ 75 (84)
T 2hl7_A 38 ADSNAPIAADLRKQIYGQLQQGKSDGEIVDY----MVARYGD 75 (84)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHTCCHHHHHHH----HHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH----HHHHCCC
T ss_conf 0067788999999999999959998999999----9997088
No 36
>>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073} (A:27-117)
Probab=22.98 E-value=28 Score=16.07 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=35.8
Q ss_pred HHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99759988999807989999870904316942899999999999999999
Q gi|254780998|r 88 SIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQE 137 (146)
Q Consensus 88 ~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~ 137 (146)
..+.+.+..+|-..+...|+..+ ..+.++++-.|...+.+..+-.+|.+
T Consensus 17 ~~~g~~~i~~it~~~i~~~~~~l-~~~g~s~~t~~~~~~~l~~~f~~a~~ 65 (91)
T 2kkp_A 17 PTLGSIPLKKLQPADIQRLYASK-LESGLSPTRVRYIHVVLHEAMSQARE 65 (91)
T ss_dssp CCCCTSCTTTCCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99588737667079999999999-97587768899999999999999998
No 37
>>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* (A:242-364)
Probab=22.85 E-value=54 Score=14.29 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=17.5
Q ss_pred HHCCCCEEEEEEEEECCCCCCCCEEEEEE
Q ss_conf 02265601678873046545488799994
Q gi|254780998|r 44 IVAGCMSKLWMVIEWENKGDQDPIMIFYA 72 (146)
Q Consensus 44 ~V~GCqS~vWl~~~~~~~~~~~~~~~f~~ 72 (146)
+=-||++++=+.+++++ +.+++++
T Consensus 19 L~GGC~~PIGa~a~~~~-----~~l~l~~ 42 (123)
T 3ecr_A 19 LEGGCSVPVAVHTAMKD-----GQLYLTG 42 (123)
T ss_dssp HC--CCSSEEEEEEEET-----TEEEEEE
T ss_pred HCCCCCCCEEEEEEEEC-----CEEEEEE
T ss_conf 39899884588999989-----9999999
No 38
>>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, membrane fusion, snare, RAB GTPase; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A (A:396-651)
Probab=22.48 E-value=36 Score=15.39 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=51.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 89999987509998999999999985089999568681550226560167887304654548879999416269999999
Q gi|254780998|r 4 INDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLL 83 (146)
Q Consensus 4 l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~ 83 (146)
++.+...+....+..-+.-|||-|..=+-.=|.. ++.++=.+=.-+ ++...... ...++..+|+||.
T Consensus 80 iq~i~~~L~~~~~~ri~vgyLmLL~~WL~~~p~A--V~~FL~~~s~l~-~L~~~~~~----------~~~~~~~lV~GL~ 146 (256)
T 3grl_A 80 LQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA--VTHFLHNSANVP-FLTGQIAE----------NLGEEEQLVQGLC 146 (256)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH--HHHHHHSTTHHH-HHHHHHHS----------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHH--HHHHCCCCCHHH-HHHHHHHH----------CCCCCCHHHHHHH
T ss_conf 9999999863551307999999999999589789--998646854099-99999984----------4688552999999
Q ss_pred HHHHHH---HCC-C-CHHHHHHCCHHHH-HHHHCCHHC
Q ss_conf 999999---759-9-8899980798999-987090431
Q gi|254780998|r 84 YIVKSI---YAH-K-KISEILKMDSLTI-LQHLGLTEN 115 (146)
Q Consensus 84 ~ll~~~---~~g-~-t~~eI~~~d~~~f-~~~lgL~~~ 115 (146)
++|+.+ ||. . +|..-.++ .+. .+.+|++.+
T Consensus 147 a~LLGicyeFn~~~~s~~~R~~l--~~li~~riG~d~y 182 (256)
T 3grl_A 147 ALLLGISIYFNDNSLETYMKEKL--KQLIEKRIGKENF 182 (256)
T ss_dssp HHHHHHHHHTCCSCCGGGCHHHH--HHHHHHHTCHHHH
T ss_pred HHHHHHHEEECCCCCCCCCHHHH--HHHHHHHHCHHHH
T ss_conf 99988724646899898888999--9999987478889
No 39
>>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343} (A:)
Probab=21.56 E-value=35 Score=15.46 Aligned_cols=62 Identities=6% Similarity=-0.120 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999997599889998079899998709043169428999999999999999999
Q gi|254780998|r 77 QIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEY 138 (146)
Q Consensus 77 ~IvkGl~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~ 138 (146)
.--+-.+..+...+.+.+..+|-..+...|+..+--...++|+-.|-..+.+..+-++|.+.
T Consensus 31 ~~y~~~l~~~~~~~g~~~l~~i~~~~i~~~~~~l~~~~~~s~~t~~~~~~~l~~~~~~a~~~ 92 (112)
T 2key_A 31 RHHKSCMRKFKEYCEGLQFHELTEDFLRDYLIYMKKTLCNADSTAQRNLSTIKIYVSAAIKK 92 (112)
T ss_dssp HHHHHHHHHTTTSCSCCCTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999998761259979849888999999998877418068899999999999999988
No 40
>>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* (A:1-229,A:362-478)
Probab=21.51 E-value=29 Score=15.96 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=30.1
Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 87999941626-9999999999999759988999807
Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146)
Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146)
..-.+.|.|-| ++|-|+++++.+.+...+++++..+
T Consensus 267 ~~~~~~GTS~aaP~vag~~al~~~~~~~~~~~~~~~~ 303 (346)
T 1xf1_A 267 KYAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSE 303 (346)
T ss_dssp SSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 8299779876335788999999986304582339889
Done!