Query gi|254780998|ref|YP_003065411.1| hypothetical protein CLIBASIA_04495 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 146 No_of_seqs 106 out of 928 Neff 6.3 Searched_HMMs 23785 Date Tue May 31 23:59:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780998.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1ni7_A ER75, hypothetical prot 100.0 0 0 312.6 13.0 137 2-142 15-151 (155) 2 3g0m_A Cysteine desulfuration 100.0 1.4E-45 0 305.5 16.1 132 3-138 9-140 (141) 3 1wlo_A SUFE protein; structura 100.0 3.9E-41 1.4E-45 276.2 8.8 134 1-141 1-136 (136) 4 2z7e_A ISCU protein, NIFU-like 92.0 0.54 2.3E-05 25.8 7.0 110 22-135 7-123 (157) 5 3lvl_A NIFU-like protein; prot 83.9 2.4 0.0001 21.8 11.0 114 22-141 6-125 (129) 6 1sh7_A Extracellular subtilisi 64.3 4.5 0.00019 20.1 3.1 37 65-101 211-248 (284) 7 2b6n_A Proteinase K; S binding 59.8 6.1 0.00026 19.2 3.1 36 66-101 216-252 (278) 8 2ixt_A 36KDA protease; serine 59.5 6.3 0.00027 19.2 3.1 36 66-101 242-278 (310) 9 2qtw_B Proprotein convertase s 56.4 9 0.00038 18.2 3.5 36 66-101 226-262 (546) 10 2iy9_A SUBA; toxin, shiga, pla 54.8 8.1 0.00034 18.5 3.0 35 67-101 265-300 (347) 11 1to2_E Subtilisin BPN'; serine 52.8 9.5 0.0004 18.1 3.1 36 66-101 213-249 (281) 12 1gci_A Subtilisin; hydrolase, 51.8 10 0.00042 17.9 3.1 36 66-101 207-243 (269) 13 1r0r_E Subtilisin carlsberg; h 51.4 10 0.00043 17.8 3.1 36 66-101 212-248 (274) 14 1y9z_A Alkaline serine proteas 51.3 10 0.00042 17.9 3.0 32 70-101 365-397 (441) 15 2oxa_A Extracellular serine pr 50.5 11 0.00045 17.7 3.0 33 69-101 331-364 (600) 16 2qq4_A Iron-sulfur cluster bio 49.1 14 0.00059 17.0 10.1 85 22-110 10-97 (138) 17 1p8j_A Furin precursor; prohor 46.8 13 0.00056 17.1 3.1 34 68-101 255-289 (471) 18 2id4_A Kexin; KEX2, kexin, fur 44.2 15 0.00065 16.7 3.1 34 68-101 266-300 (503) 19 1r6v_A Subtilisin-like serine 41.5 18 0.00076 16.3 3.1 34 68-101 375-409 (671) 20 3afg_A Subtilisin-like serine 38.9 20 0.00085 16.0 3.1 36 66-101 351-387 (539) 21 3i6s_A Subtilisin-like proteas 32.6 25 0.0011 15.4 3.1 33 69-101 421-454 (649) 22 2hl7_A Cytochrome C-type bioge 31.5 27 0.0011 15.3 3.3 43 72-118 38-81 (84) 23 3f7m_A Alkaline serine proteas 29.1 29 0.0012 15.1 2.5 36 66-101 217-253 (279) 24 2x8j_A Intracellular subtilisi 28.8 30 0.0012 15.0 4.6 37 65-101 241-283 (327) 25 2pwa_A Proteinase K; structure 24.2 31 0.0013 14.8 1.9 35 66-100 216-251 (279) 26 1xjs_A NIFU-like protein; SR17 22.7 38 0.0016 14.3 8.3 90 16-110 6-99 (147) 27 2p4e_P Proprotein convertase s 20.8 17 0.00071 16.5 0.0 34 68-101 380-414 (692) No 1 >1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1 Probab=100.00 E-value=0 Score=312.57 Aligned_cols=137 Identities=28% Similarity=0.510 Sum_probs=131.1 Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHH Q ss_conf 88899999875099989999999999850899995686815502265601678873046545488799994162699999 Q gi|254780998|r 2 IPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCG 81 (146) Q Consensus 2 ~~l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkG 81 (146) |++++|+++|+.|+||++||+|||++||++|++|+++|+++|+|+||||+|||+++.+ ++|+++|+|||||.|||| T Consensus 15 ~~~~~i~e~f~~~~dwedry~~Li~lgk~l~~l~e~~k~d~n~V~GCqS~vWl~~~~~----~~g~~~f~~dSDa~IvkG 90 (155) T 1ni7_A 15 VTAETLRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTVA----ENGKMHFFGDSEGRIVRG 90 (155) T ss_dssp SCHHHHHHHHTTCCSHHHHHHHHHHHHHHSCCCCHHHHHHSEEECSSSSCEEEECCCC----SSSCCCCEEEESSHHHHH T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHCHHHCCCCCCEEEEEEEEEC----CCCEEEEEECCCHHHHHH T ss_conf 6899999999818999999999999884299999689554525067613688888862----697799984253399999 Q ss_pred HHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999975998899980798999987090431694289999999999999999999633 Q gi|254780998|r 82 LLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEYLNVH 142 (146) Q Consensus 82 l~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~l~~~ 142 (146) |++||+.+|||+||+||++++|.+|++++||.++|||+|+|||++|+++||++|++++.-+ T Consensus 91 l~aiL~~~~~g~t~~eI~~~~~~~~~~~lGL~~~LS~sR~NGl~~mi~~Ik~~a~~~l~~~ 151 (155) T 1ni7_A 91 LLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAIIAATKQVLEHH 151 (155) T ss_dssp HHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHHHHHHHHHHHHHHHHHHHHHHC-- T ss_pred HHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999987999999985698999987687400682189999999999999999998742 No 2 >3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national institute of allergy and infectious diseases, niaid, hydrolase; 1.76A {Salmonella typhimurium LT2} PDB: 1mzg_A Probab=100.00 E-value=1.4e-45 Score=305.53 Aligned_cols=132 Identities=23% Similarity=0.487 Sum_probs=126.6 Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHH Q ss_conf 88999998750999899999999998508999956868155022656016788730465454887999941626999999 Q gi|254780998|r 3 PINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGL 82 (146) Q Consensus 3 ~l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl 82 (146) +.++|+++|+.|+||++||+|||++||++|++|+++|+++|+|+||||+|||+++.+ .+|+++|+|||||.||||+ T Consensus 9 ~~~~iie~f~~~~dwe~ry~~Li~lgk~l~~l~~~~r~~~n~V~GCqS~vWl~~~~~----~~g~~~f~~dSda~IvkGl 84 (141) T 3g0m_A 9 DKEKLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNPQNTIHGCQSQVWIVMRRN----ANGIIELQGDSDAAIVKGL 84 (141) T ss_dssp CHHHHHHHHHTCCSHHHHHHHHHHHHHTSCCCCGGGCSGGGBCCSSSSCEEEEEEEC----TTSBEEEEEEESSHHHHHH T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCCCCEEEEEEEEEC----CCCCEEEEECCCHHHHHHH T ss_conf 099999999859999999999999883599999689146754246721588888874----8972688744720999999 Q ss_pred HHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999997599889998079899998709043169428999999999999999999 Q gi|254780998|r 83 LYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEY 138 (146) Q Consensus 83 ~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~ 138 (146) ++||+.+|||.||+||+++||..||+++||.+||||+|+|||.+|+++||.+|+++ T Consensus 85 ~ail~~~~~g~tp~eI~~~d~~~~~~~lgL~~~Ls~~R~nGl~~mi~~ik~~A~~l 140 (141) T 3g0m_A 85 MAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTPSRSQGLEAMIRAIRAKAATL 140 (141) T ss_dssp HHHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999998799999998579799998848750068418899999999999999971 No 3 >1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus HB8} Probab=100.00 E-value=3.9e-41 Score=276.20 Aligned_cols=134 Identities=16% Similarity=0.274 Sum_probs=122.4 Q ss_pred CC--CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHH Q ss_conf 98--8899999875099989999999999850899995686815502265601678873046545488799994162699 Q gi|254780998|r 1 MI--PINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQI 78 (146) Q Consensus 1 M~--~l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~I 78 (146) |+ ++++|+++|+.+++ ++||+|||++|++++++|++ +++|+|+||||+|||.++.++ +.++++|.|||||.| T Consensus 1 m~p~kl~~iie~F~~l~~-eery~~Li~lgk~l~~~~~~--~~~n~V~GCqS~vWl~~~~~~---~~~~~~f~~dSda~i 74 (136) T 1wlo_A 1 MVPPKLKQALELFKSLPK-ELRSQVLLEYAAKVPPPPPG--VELERVHECQTPFFVHADVEG---GKVRLYFHVPDEAPT 74 (136) T ss_dssp CCCHHHHHHHHHHHHSCH-HHHHHHHHHHHHTCCCCCSS--CCCEECTTSSSCCEEEEEEET---TEEEEEEECSSCCHH T ss_pred CCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCCHHH--HHHCCCCCCCCCEEEEEEECC---CCEEEEEEEECCHHH T ss_conf 997899999999984998-99999999999886303333--133016767765689999618---815899986331199 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999997599889998079899998709043169428999999999999999999963 Q gi|254780998|r 79 VCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEYLNV 141 (146) Q Consensus 79 vkGl~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~l~~ 141 (146) |||+++||+.+|||+||+||+++++ +|++++||+++|||+|+|||.+|+++||.+|+++++. T Consensus 75 vkGl~ail~~~~~g~t~eei~~~~~-~~~~~lgL~~~Ls~~R~nGl~~mi~~ik~~a~~~las 136 (136) T 1wlo_A 75 VKAFAGLLREGLEGESPEAVLEVPP-GFYRGYGLEEFFTPLRLRGLEAALLRLQAQVRKALTS 136 (136) T ss_dssp HHHHHHHHHHTTTTCCTTTTTSSCT-TTTTTTTSHHHHTHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHCCCHHHHHHCCH-HHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 8899999999991899999985999-9998768351167318999999999999999998539 No 4 >2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus} Probab=91.99 E-value=0.54 Score=25.81 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=68.2 Q ss_pred HHHHHHHHHCC---CCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 99999985089---999568681550226560167887304654548879999416269999999999999759988999 Q gi|254780998|r 22 HYLIELGKKLP---LFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEI 98 (146) Q Consensus 22 ~~Li~lgk~l~---~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~eI 98 (146) +-|+++.+... .+++..-.-.-.-+.|-..+.+...++...+.-.-+.|.+..=+ |...-+++++...-|++.+|+ T Consensus 7 e~Ildh~~nP~n~G~le~~~~~~~~~np~CGD~i~i~l~Id~e~~~I~di~f~~~GCa-is~AsaSil~e~i~Gktl~ea 85 (157) T 2z7e_A 7 EKVLDHFLNPRNVGVLEDANGVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTFGCG-SAIAVSSMLTEMVKGKPIQYA 85 (157) T ss_dssp HHHHHHHHSCSSBSCCTTCSEEEEEEETTTTEEEEEEEEECTTTCBEEEEEEEEESCT-THHHHHHHHHHHHTTSBHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEECCCH-HHHHHHHHHHHHHCCCCHHHH T ss_conf 9999998695888989999979885899985779999999559997978899976875-667899999999769959999 Q ss_pred HHCCHHHHHHHHCCHHCCCHHHHH----HHHHHHHHHHHHH Q ss_conf 807989999870904316942899----9999999999999 Q gi|254780998|r 99 LKMDSLTILQHLGLTENLSQKRMN----GLYTIVNKIQDLT 135 (146) Q Consensus 99 ~~~d~~~f~~~lgL~~~Lt~~R~n----Gl~~m~~~ik~~a 135 (146) .+++..+.++.+| .|.|.|.. ++.++..-++.+. T Consensus 86 ~~I~~~~i~e~Lg---~lpp~R~~CA~La~~Al~~Al~dy~ 123 (157) T 2z7e_A 86 LNLTYKDIFEELG---GLPPQKIHCTNLGLETLHVAIKDYL 123 (157) T ss_dssp HHCCHHHHHHHHT---CCCCSSCCTTCCHHHHHHHHHHHHH T ss_pred HHCCHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 8512589999866---9995314299999999999999999 No 5 >3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 1q48_A 1r9p_A 1wfz_A Probab=83.94 E-value=2.4 Score=21.79 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=74.6 Q ss_pred HHHHHHHHHCC---CCCHHHCC-HHH--HHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCH Q ss_conf 99999985089---99956868-155--0226560167887304654548879999416269999999999999759988 Q gi|254780998|r 22 HYLIELGKKLP---LFPKEYMT-DQN--IVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKI 95 (146) Q Consensus 22 ~~Li~lgk~l~---~l~e~~k~-~~~--~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~ 95 (146) +-++++.+... .+++.... ... .=+.|--.+.|...+++.+. -.-+.|.+..= .|...-++++++.+.|+|. T Consensus 6 e~Ildh~~nP~n~G~l~~~d~~~~~~~~~np~CGD~i~i~l~i~~~~i-I~di~F~~~GC-~is~Asas~~~e~i~Gkt~ 83 (129) T 3lvl_A 6 EKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGI-IEDARFKTYGC-GSAIASSSLVTEWVKGKSL 83 (129) T ss_dssp HHHHHHHHSCSSBSCCCTTCSSEEEEEEECTTTCCEEEEEEEECSSSC-EEEEEEEEESC-HHHHHHHHHHHHHHTTCCH T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCE-EEEEEEEECCC-HHHHHHHHHHHHHHCCCCH T ss_conf 999998769498888998420023455589987738999999737855-87787773588-8999999999999859969 Q ss_pred HHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998079899998709043169428999999999999999999963 Q gi|254780998|r 96 SEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEYLNV 141 (146) Q Consensus 96 ~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~l~~ 141 (146) +|+..++..+.++.++ +.|+|.+=-.--...++.....+.++ T Consensus 84 ~ea~~i~~~~i~~~l~----~~p~r~~Ca~L~~~al~~al~~y~~k 125 (129) T 3lvl_A 84 DEAQAIKNTDIAEELE----LPPVKIHCSILAEDAIKAAIADYKSK 125 (129) T ss_dssp HHHHTCCHHHHHHHHT----CCGGGGHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHCCHHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9998653689998733----78751209999999999999999987 No 6 >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, calcium depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Probab=64.34 E-value=4.5 Score=20.05 Aligned_cols=37 Identities=8% Similarity=-0.048 Sum_probs=30.8 Q ss_pred CCEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 887999941626-9999999999999759988999807 Q gi|254780998|r 65 DPIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 65 ~~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) .+...+.|.|-| ++|-|+++++.+.+-+.+|+||.++ T Consensus 211 ~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~i~~~ 248 (284) T 1sh7_A 211 GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGL 248 (284) T ss_dssp SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH T ss_pred CCEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 97585688616889999999999987889999999999 No 7 >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Probab=59.80 E-value=6.1 Score=19.24 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=28.9 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 87999941626-9999999999999759988999807 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) ....+.|.|=| ++|.|+++++.+.+-..+|+||.++ T Consensus 216 ~~~~~~GTS~AaP~VaG~aAll~~~~p~lt~~~i~~~ 252 (278) T 2b6n_A 216 ATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNL 252 (278) T ss_dssp CEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 6556777317899999999999987889899999999 No 8 >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Probab=59.46 E-value=6.3 Score=19.15 Aligned_cols=36 Identities=11% Similarity=-0.047 Sum_probs=29.3 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 87999941626-9999999999999759988999807 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +...+.|.|-| ++|-|+++++.+.+-..++.||+++ T Consensus 242 ~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~v~~~ 278 (310) T 2ixt_A 242 GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSN 278 (310) T ss_dssp SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH T ss_pred CEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 5022688889899999999999987889999999999 No 9 >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholesterolemia, low density lipoprotein receptor, alternative splicing; HET: NAG; 1.90A {Homo sapiens} PDB: 3bps_A 3gcw_A 3gcx_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2w2o_A Probab=56.42 E-value=9 Score=18.21 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=28.9 Q ss_pred CEEEEEECCH-HHHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 8799994162-69999999999999759988999807 Q gi|254780998|r 66 PIMIFYAVSD-SQIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 66 ~~~~f~~dSd-a~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +-..+.|.|= |++|-|+++||+..+-..+|.||.+. T Consensus 226 ~y~~~sGTS~AaP~VAG~aALlls~~P~lt~~~vk~~ 262 (546) T 2qtw_B 226 CFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQR 262 (546) T ss_dssp CEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 1898367899899999999999986889999999999 No 10 >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Probab=54.83 E-value=8.1 Score=18.47 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=28.3 Q ss_pred EEEEEECCH-HHHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 799994162-69999999999999759988999807 Q gi|254780998|r 67 IMIFYAVSD-SQIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 67 ~~~f~~dSd-a~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) .-.+.|.|= |++|-|+++++...+-..+|++|+++ T Consensus 265 y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~i~~~ 300 (347) T 2iy9_A 265 TGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRT 300 (347) T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHH T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 434786779899999999999987889999999999 No 11 >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Probab=52.84 E-value=9.5 Score=18.06 Aligned_cols=36 Identities=11% Similarity=0.023 Sum_probs=29.3 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 87999941626-9999999999999759988999807 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +...+.|.|-| ++|-|+++++...+-..+++||.++ T Consensus 213 ~~~~~~GTS~AaP~vaG~~All~~~~p~lt~~~i~~~ 249 (281) T 1to2_E 213 KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSS 249 (281) T ss_dssp EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 2675245126888999999999987879999999999 No 12 >1gci_A Subtilisin; hydrolase, serine protease, ultra-high resolution; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Probab=51.75 E-value=10 Score=17.92 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=28.8 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 87999941626-9999999999999759988999807 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +...+.|.|=| ++|-|++++|.+.+-..++.+|.++ T Consensus 207 ~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~ 243 (269) T 1gci_A 207 TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNH 243 (269) T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 6586788750369999999999987889999999999 No 13 >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A 1vsb_A* 3vsb_A* ... Probab=51.43 E-value=10 Score=17.84 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=29.6 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 87999941626-9999999999999759988999807 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +...+.|.|=| ++|-|+++++.+.+-..+|.+|.++ T Consensus 212 ~~~~~~GTS~AaP~VaG~~All~~~~p~lt~~~ik~~ 248 (274) T 1r0r_E 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNR 248 (274) T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 7164688752018899999999988889899999999 No 14 >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain, hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Probab=51.29 E-value=10 Score=17.91 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=26.9 Q ss_pred EEECCH-HHHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 994162-69999999999999759988999807 Q gi|254780998|r 70 FYAVSD-SQIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 70 f~~dSd-a~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +.|.|= |++|-|.+|||.+.+-..+|.+|+++ T Consensus 365 ~sGTSMAaP~VAG~aALl~q~~P~~s~~~ik~~ 397 (441) T 1y9z_A 365 YNGTSMATPHVSGVATLVWSYHPECSASQVRAA 397 (441) T ss_dssp ECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHH T ss_pred ECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 723899899999999999998889999999999 No 15 >2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} PDB: 3hjr_A Probab=50.46 E-value=11 Score=17.75 Aligned_cols=33 Identities=12% Similarity=0.332 Sum_probs=27.5 Q ss_pred EEEECCH-HHHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 9994162-69999999999999759988999807 Q gi|254780998|r 69 IFYAVSD-SQIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 69 ~f~~dSd-a~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) .|.|.|= |++|.|.+||+++.+-..++.||+.+ T Consensus 331 ~~sGTS~AaP~VaGvaALll~~~P~lt~~~v~~~ 364 (600) T 2oxa_A 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDL 364 (600) T ss_dssp EECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHH T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 2036653105678999999987839899999999 No 16 >2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus} Probab=49.12 E-value=14 Score=16.99 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=55.8 Q ss_pred HHHHHHHHHCC---CCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 99999985089---999568681550226560167887304654548879999416269999999999999759988999 Q gi|254780998|r 22 HYLIELGKKLP---LFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEI 98 (146) Q Consensus 22 ~~Li~lgk~l~---~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~eI 98 (146) +-|+|+.+... .+++....-..+=+.|=..+=|...+++.... -+.|.+.+= .|...=++++++...|++.+|+ T Consensus 10 ~~Ildh~~nP~n~g~l~~~~~~~~~~np~CGD~i~i~l~i~~~~I~--d~~f~~~GC-ai~~ASas~l~e~i~gk~~~ea 86 (138) T 2qq4_A 10 EILLDHYQSPRNFGVLPQATKQAGGMNPSCGDQVEVMVLLEGDTIA--DIRFQGQGC-AISTASASLMTEAVKGKKVAEA 86 (138) T ss_dssp HHHHHHHHSCTTBSCCTTCSEEEEEECTTTCCEEEEEEEEETTEEE--EEEEEEECC-HHHHHHHHHHHHHHTTSBHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCEEE--EEEEEECCC-HHHHHHHHHHHHHHCCCCHHHH T ss_conf 9999998598988989999956553799987689999997376788--888996485-8999999999999849999999 Q ss_pred HHCCHHHHHHHH Q ss_conf 807989999870 Q gi|254780998|r 99 LKMDSLTILQHL 110 (146) Q Consensus 99 ~~~d~~~f~~~l 110 (146) ..+. ..|...+ T Consensus 87 ~~l~-~~~~~~~ 97 (138) T 2qq4_A 87 LELS-RKFQAMV 97 (138) T ss_dssp HHHH-HHHHHHH T ss_pred HHHH-HHHHHHH T ss_conf 9999-9999999 No 17 >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain, hydrolase; HET: DKA MAI NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Probab=46.78 E-value=13 Score=17.14 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=28.3 Q ss_pred EEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 999941626-9999999999999759988999807 Q gi|254780998|r 68 MIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 68 ~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) ..+.|.|=| ++|-|.+||+.+.+-..++.+|+.+ T Consensus 255 ~~~sGTS~AaP~VAG~aALl~~~~P~lt~~~v~~i 289 (471) T 1p8j_A 255 ESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHL 289 (471) T ss_dssp EEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 47687875216788999999977889789999999 No 18 >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, subtilisin like protease, serine protease, hydrolase; HET: LYM NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Probab=44.19 E-value=15 Score=16.74 Aligned_cols=34 Identities=6% Similarity=0.081 Sum_probs=27.9 Q ss_pred EEEEECCH-HHHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 99994162-69999999999999759988999807 Q gi|254780998|r 68 MIFYAVSD-SQIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 68 ~~f~~dSd-a~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) -.|.|.|- |++|-|.+||+++.+-..++.||..+ T Consensus 266 ~~~sGTS~AaP~VaGv~AL~l~anP~Lt~~~v~~i 300 (503) T 2id4_A 266 NSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYL 300 (503) T ss_dssp EEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 78897775116676999999976889899999999 No 19 >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Probab=41.48 E-value=18 Score=16.32 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=27.7 Q ss_pred EEEEECCH-HHHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 99994162-69999999999999759988999807 Q gi|254780998|r 68 MIFYAVSD-SQIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 68 ~~f~~dSd-a~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) -.+.|.|= +++|-|++||+.+.+-..+|.||.++ T Consensus 375 ~~~sGTS~AaP~VAG~aALl~~~~P~lt~~~v~~~ 409 (671) T 1r6v_A 375 DYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKL 409 (671) T ss_dssp EEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 88727530578999999999987889999999999 No 20 >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Probab=38.87 E-value=20 Score=16.00 Aligned_cols=36 Identities=6% Similarity=-0.067 Sum_probs=29.6 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 87999941626-9999999999999759988999807 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +...+.|.|=| ++|.|+++++.+.+-..+|.+|.++ T Consensus 351 ~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~ik~~ 387 (539) T 3afg_A 351 YYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTA 387 (539) T ss_dssp SEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 1020257543320699999999987889999999999 No 21 >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Probab=32.56 E-value=25 Score=15.38 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=27.4 Q ss_pred EEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 99941626-9999999999999759988999807 Q gi|254780998|r 69 IFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 69 ~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) .+.|.|=| +.|.|.+||+.+.+-..+|.+|.++ T Consensus 421 ~~sGTSMAaP~VAGvaALl~q~~p~~sp~~ik~~ 454 (649) T 3i6s_A 421 LESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSA 454 (649) T ss_dssp EECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH T ss_pred EECCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHH T ss_conf 8317765665302489999977778999999999 No 22 >2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa} Probab=31.45 E-value=27 Score=15.26 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=32.8 Q ss_pred ECCHHHHHHHHHHHHHH-HHCCCCHHHHHHCCHHHHHHHHCCHHCCCH Q ss_conf 41626999999999999-975998899980798999987090431694 Q gi|254780998|r 72 AVSDSQIVCGLLYIVKS-IYAHKKISEILKMDSLTILQHLGLTENLSQ 118 (146) Q Consensus 72 ~dSda~IvkGl~~ll~~-~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~ 118 (146) .+|+|.+.+-+-..+.. +-+|+|.+||.++ |.+..|=.-.+.| T Consensus 38 ~~S~s~~A~dmr~~I~~~i~~G~sd~eI~~~----l~~rYG~~Il~~P 81 (84) T 2hl7_A 38 ADSNAPIAADLRKQIYGQLQQGKSDGEIVDY----MVARYGDFVRYKP 81 (84) T ss_dssp TTCCSHHHHHHHHHHHHHHHHTCCHHHHHHH----HHHHHTTTCEECC T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH----HHHHCCCEEEEEC T ss_conf 0078789999999999999969999999999----9986288386419 No 23 >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Probab=29.08 E-value=29 Score=15.07 Aligned_cols=36 Identities=8% Similarity=-0.040 Sum_probs=27.0 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 87999941626-9999999999999759988999807 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +...+.|.|=| ++|-|++++|.......+++++..+ T Consensus 217 ~y~~~sGTS~AaP~VaG~~All~~~~p~~~~~~~~~l 253 (279) T 3f7m_A 217 RTNTISGTSMATPHIAGLAAYLFGLEGGSAGAMCGRI 253 (279) T ss_dssp CEEEECSHHHHHHHHHHHHHHHHHHTCCCTTTHHHHH T ss_pred CEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 3663481859899999999999856899859999999 No 24 >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} Probab=28.79 E-value=30 Score=14.98 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=29.2 Q ss_pred CCEEEEEECCHH-HHHHHHHHHHHHHHC-----CCCHHHHHHC Q ss_conf 887999941626-999999999999975-----9988999807 Q gi|254780998|r 65 DPIMIFYAVSDS-QIVCGLLYIVKSIYA-----HKKISEILKM 101 (146) Q Consensus 65 ~~~~~f~~dSda-~IvkGl~~ll~~~~~-----g~t~~eI~~~ 101 (146) .+.-.+.|.|-| ++|-|+++++.+.+- ..+|.+|..+ T Consensus 241 ~~~~~~sGTS~AaP~VaG~aALl~~~~p~~~~~~lt~~~i~~~ 283 (327) T 2x8j_A 241 SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQ 283 (327) T ss_dssp TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH T ss_conf 9853378738989999999999987390002689899999999 No 25 >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3dyb_A* 3gt3_A* 3gt4_A* 3dw3_X 1bjr_E 1cnm_A 1oyo_A* ... Probab=24.23 E-value=31 Score=14.81 Aligned_cols=35 Identities=14% Similarity=0.002 Sum_probs=26.7 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 87999941626-999999999999975998899980 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILK 100 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~ 100 (146) +...+.|.|=| ++|-|++++|.+.+...+++++.. T Consensus 216 ~~~~~sGTS~AaP~VaG~~All~~~~p~~~~~~~~~ 251 (279) T 2pwa_A 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY 251 (279) T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH T ss_pred CEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 043068572889999999999997089985999999 No 26 >1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A Probab=22.75 E-value=38 Score=14.28 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=58.5 Q ss_pred CHHHHH-HHHHHHHHHCC---CCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHC Q ss_conf 989999-99999985089---99956868155022656016788730465454887999941626999999999999975 Q gi|254780998|r 16 DLHDRY-HYLIELGKKLP---LFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYA 91 (146) Q Consensus 16 d~~~ry-~~Li~lgk~l~---~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~ 91 (146) |.++-| +-|+++++... .+++.. .-+-.=+-|=..+=|...+++... ..+.|.+..=+ |...=++++.+... T Consensus 6 ~l~~lY~e~Ildh~~nP~n~g~l~~~~-~~~~~Np~CGD~i~i~l~i~~~~I--~d~~f~~~GCa-i~~ASasil~e~~~ 81 (147) T 1xjs_A 6 NLDTLYRQVIMDHYKNPRNKGVLNDSI-VVDMNNPTCGDRIRLTMKLDGDIV--EDAKFEGEGCS-ISMASASMMTQAIK 81 (147) T ss_dssp TTHHHHHHHHHHHHHSCCCCCCCCSSE-EEEEEETTTTEEEEEEEECCSSBC--CEEEEEEESSH-HHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCC-EEEECCCCCCEEEEEEEEECCCEE--EEEEEEECCCH-HHHHHHHHHHHHHC T ss_conf 299999999999985968889799987-642079998618999999828977--88677856749-89999999999985 Q ss_pred CCCHHHHHHCCHHHHHHHH Q ss_conf 9988999807989999870 Q gi|254780998|r 92 HKKISEILKMDSLTILQHL 110 (146) Q Consensus 92 g~t~~eI~~~d~~~f~~~l 110 (146) |++.+|+..+ ...|.+.+ T Consensus 82 gk~~~ea~~l-~~~~~~~l 99 (147) T 1xjs_A 82 GKDIETALSM-SKIFSDMM 99 (147) T ss_dssp TSBHHHHHHH-HHHHHHHH T ss_pred CCCHHHHHHH-HHHHHHHH T ss_conf 9989999999-99999986 No 27 >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrolase; 1.98A {Homo sapiens} Probab=20.79 E-value=17 Score=16.49 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=27.5 Q ss_pred EEEEECCH-HHHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 99994162-69999999999999759988999807 Q gi|254780998|r 68 MIFYAVSD-SQIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 68 ~~f~~dSd-a~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) ..+.|.|= +++|-|+++++...+-..||.+|.+. T Consensus 380 ~~~SGTSmAaP~VAGvaALlls~~P~lTpa~Vk~~ 414 (692) T 2p4e_P 380 VSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQR 414 (692) T ss_dssp ----------------------------------- T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 98269899899999999999997889999999999 Done!