HHSEARCH alignment of GI: 254780998 and SCOP domain: d1ni7a_

Alignment
>d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=312.75  Aligned_cols=134  Identities=28%  Similarity=0.509  Sum_probs=129.4

Q ss_pred             CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHH
Q ss_conf             88899999875099989999999999850899995686815502265601678873046545488799994162699999
Q gi|254780998|r    2 IPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCG   81 (146)
Q Consensus         2 ~~l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkG   81 (146)
                      |++++|+++|+.|+||++||+|||++||++|++|+++|+++|+|+||||+|||+++.+    ++|+++|+|||||.||||
T Consensus        15 ~~~~~i~e~f~~~~dweery~~Li~lgk~l~~l~e~~k~d~~~V~GCqS~vWl~~~~~----~~g~~~f~adSDa~IvkG   90 (149)
T d1ni7a_          15 VTAETLRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTVA----ENGKMHFFGDSEGRIVRG   90 (149)
T ss_dssp             SCHHHHHHHHTTCCSHHHHHHHHHHHHHHSCCCCHHHHHHSEEECSSSSCEEEECCCC----SSSCCCCEEEESSHHHHH
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHCHHHEECCCEEEEEEEEEEC----CCCEEEEEECCCHHHHHH
T ss_conf             5799999999818999999999999985199999689455544235346789988871----698799995153799999


Q ss_pred             HHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999975998899980798999987090431694289999999999999999999
Q gi|254780998|r   82 LLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEYL  139 (146)
Q Consensus        82 l~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~l  139 (146)
                      |++||+.+|||+||+||++++|.+|++++||++||||+|+|||++|+++||.+|++++
T Consensus        91 l~~iL~~~~sg~t~~eI~~~~~~~~~~~lGL~~~Ls~sR~NGl~~mi~~Ik~~a~~~l  148 (149)
T d1ni7a_          91 LLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAIIAATKQVL  148 (149)
T ss_dssp             HHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999987999899985698999987797401770289999999999999999973


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: SufE-like
domain: Hypothetical protein YgdK
species: Escherichia coli [TaxId: 562]