Query gi|254780998|ref|YP_003065411.1| hypothetical protein CLIBASIA_04495 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 146 No_of_seqs 106 out of 928 Neff 6.3 Searched_HMMs 13730 Date Wed Jun 1 11:05:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780998.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1ni7a_ d.224.1.1 (A:) Hypothe 100.0 0 0 312.8 13.0 134 2-139 15-148 (149) 2 d1mzga_ d.224.1.1 (A:) SufE (Y 100.0 1.4E-45 0 304.2 15.8 137 3-143 4-140 (144) 3 d1wfza_ d.224.1.2 (A:) Iron-su 91.6 0.44 3.2E-05 24.9 12.0 90 46-141 31-120 (130) 4 d1r9pa_ d.224.1.2 (A:) NifU-li 89.2 0.72 5.2E-05 23.6 9.3 89 46-141 35-124 (134) 5 d2ixta1 c.41.1.1 (A:1-309) Sph 56.1 4.5 0.00033 18.6 3.1 36 66-101 242-278 (309) 6 d1p8ja2 c.41.1.1 (A:109-442) F 53.8 5.1 0.00037 18.2 3.1 35 67-101 253-288 (334) 7 d1r0re_ c.41.1.1 (E:) Subtilis 52.0 5.7 0.00042 17.9 3.1 36 66-101 212-248 (274) 8 d1gcia_ c.41.1.1 (A:) Subtilis 49.8 6.5 0.00047 17.6 3.1 36 66-101 207-243 (269) 9 d1v6ca_ c.41.1.1 (A:) Alkaline 46.2 7.8 0.00056 17.1 3.0 32 70-101 365-397 (435) 10 d1to2e_ c.41.1.1 (E:) Subtilis 42.7 9.8 0.00071 16.5 3.1 35 67-101 214-249 (281) 11 d1r6va_ c.41.1.1 (A:) Fervidol 40.4 11 0.0008 16.2 3.1 36 66-101 373-409 (671) 12 d1fs1b1 a.157.1.1 (B:86-140) C 35.2 9 0.00066 16.7 2.0 29 73-101 21-53 (55) 13 d2id4a2 c.41.1.1 (A:122-460) K 33.0 14 0.0011 15.4 3.1 35 67-101 257-292 (339) 14 d1nexa1 a.157.1.1 (A:116-185) 31.2 13 0.00095 15.7 2.2 38 74-119 23-64 (70) 15 d1fpoa1 a.2.3.1 (A:1-76) HSC20 23.9 16 0.0012 15.1 1.6 16 10-25 57-72 (76) 16 d2o4ta1 a.69.4.1 (A:16-105) Un 22.6 22 0.0016 14.3 5.1 34 77-110 36-70 (90) 17 d2pwaa1 c.41.1.1 (A:1-279) Pro 22.3 21 0.0015 14.4 1.9 35 66-100 216-251 (279) 18 d2o3la1 a.69.4.1 (A:14-95) Hyp 22.0 23 0.0017 14.2 4.8 34 77-110 40-74 (82) 19 d1pdaa2 d.50.2.1 (A:220-307) P 21.1 24 0.0017 14.1 3.2 25 43-72 18-42 (88) 20 d1su0b_ d.224.1.2 (B:) IscU ho 20.1 25 0.0018 13.9 8.1 84 22-110 7-93 (136) No 1 >d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=312.75 Aligned_cols=134 Identities=28% Similarity=0.509 Sum_probs=129.4 Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHH Q ss_conf 88899999875099989999999999850899995686815502265601678873046545488799994162699999 Q gi|254780998|r 2 IPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCG 81 (146) Q Consensus 2 ~~l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkG 81 (146) |++++|+++|+.|+||++||+|||++||++|++|+++|+++|+|+||||+|||+++.+ ++|+++|+|||||.|||| T Consensus 15 ~~~~~i~e~f~~~~dweery~~Li~lgk~l~~l~e~~k~d~~~V~GCqS~vWl~~~~~----~~g~~~f~adSDa~IvkG 90 (149) T d1ni7a_ 15 VTAETLRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTVA----ENGKMHFFGDSEGRIVRG 90 (149) T ss_dssp SCHHHHHHHHTTCCSHHHHHHHHHHHHHHSCCCCHHHHHHSEEECSSSSCEEEECCCC----SSSCCCCEEEESSHHHHH T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHCHHHEECCCEEEEEEEEEEC----CCCEEEEEECCCHHHHHH T ss_conf 5799999999818999999999999985199999689455544235346789988871----698799995153799999 Q ss_pred HHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999975998899980798999987090431694289999999999999999999 Q gi|254780998|r 82 LLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEYL 139 (146) Q Consensus 82 l~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~l 139 (146) |++||+.+|||+||+||++++|.+|++++||++||||+|+|||++|+++||.+|++++ T Consensus 91 l~~iL~~~~sg~t~~eI~~~~~~~~~~~lGL~~~Ls~sR~NGl~~mi~~Ik~~a~~~l 148 (149) T d1ni7a_ 91 LLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAIIAATKQVL 148 (149) T ss_dssp HHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999987999899985698999987797401770289999999999999999973 No 2 >d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=1.4e-45 Score=304.23 Aligned_cols=137 Identities=26% Similarity=0.477 Sum_probs=130.1 Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHH Q ss_conf 88999998750999899999999998508999956868155022656016788730465454887999941626999999 Q gi|254780998|r 3 PINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGL 82 (146) Q Consensus 3 ~l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl 82 (146) +.++|+++|+.|+||++||+|||++||++|++|+++|+++|+|+||||+|||.++.+ .+++++|+|||||.||||+ T Consensus 4 ~~~~l~~~f~~~~dwe~ry~~Li~lgk~lp~lp~~~k~~~n~V~GCqS~vWl~~~~~----~~~~~~f~~dSda~IvkGl 79 (144) T d1mzga_ 4 DKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSPQNSIQGCQSQVWIVMRQN----AQGIIELQGDSDAAIVKGL 79 (144) T ss_dssp CHHHHHHHHHHCSSHHHHHHHHHHHHHHSCCCCTTTSSGGGEECSSSSCEEEEEEEC----SSSCEEEEEEESSHHHHHH T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHEECCCEEEEEEEEEEC----CCCCEEEEEECCHHHHHHH T ss_conf 789999998747999999999999984299999689445633033135677765643----6786699862733999999 Q ss_pred HHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999759988999807989999870904316942899999999999999999996331 Q gi|254780998|r 83 LYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEYLNVHI 143 (146) Q Consensus 83 ~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~l~~~~ 143 (146) ++||+.+|||+||+||+++||.+|++++||.++|||+|+|||.+|+++||.+|+++...+- T Consensus 80 ~ail~~~~~g~t~~eI~~~d~~~~~~~lgL~~~Ls~sR~NGl~~mi~~ik~~A~~~~~~~~ 140 (144) T d1mzga_ 80 IAVVFILYDQMTPQDIVNFDVRPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALSLEHH 140 (144) T ss_dssp HHHHHHHTTTCCHHHHHHCCCHHHHHHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_pred HHHHHHHHCCCCHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999879999999846969999885874006841889999999999999999999876 No 3 >d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Probab=91.62 E-value=0.44 Score=24.87 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=66.6 Q ss_pred CCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHH Q ss_conf 26560167887304654548879999416269999999999999759988999807989999870904316942899999 Q gi|254780998|r 46 AGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLY 125 (146) Q Consensus 46 ~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~ 125 (146) +.|=-.+.|...+++.... ..+.|.++.=+ |...-++++++.+.|++.+|+..++..++++.+| |.|.|.+=-. T Consensus 31 P~CGD~i~i~l~v~~~~~I-~di~F~~~GC~-is~AsaS~~tel~~Gkt~~ea~~i~~~~i~~~l~----l~p~R~~CA~ 104 (130) T d1wfza_ 31 PACGDVMKLQIQVDEKGKI-VDARFKTFGCG-SAIASSSLATEWVKGKTVEEALTIKNTDIAKELC----LPPVKLHCSM 104 (130) T ss_dssp TTTTEEEEEEEEECSSSBE-EEEEEECCSCH-HHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHHT----CCGGGHHHHH T ss_pred CCCCCEEEEEEEECCCCEE-EEEEEEEECCC-HHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHCC----CCCCHHHHHH T ss_conf 8757589999995589939-89999842783-5477999999998616889987317399998727----9962135999 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999963 Q gi|254780998|r 126 TIVNKIQDLTQEYLNV 141 (146) Q Consensus 126 ~m~~~ik~~a~~~l~~ 141 (146) --...++.....|..+ T Consensus 105 La~~aL~~Al~~y~~k 120 (130) T d1wfza_ 105 LAEDAIKAALADYKLK 120 (130) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999974 No 4 >d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]} Probab=89.19 E-value=0.72 Score=23.56 Aligned_cols=89 Identities=12% Similarity=0.134 Sum_probs=62.5 Q ss_pred CCCCEEEEEEEEECCCC-CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHH Q ss_conf 26560167887304654-54887999941626999999999999975998899980798999987090431694289999 Q gi|254780998|r 46 AGCMSKLWMVIEWENKG-DQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGL 124 (146) Q Consensus 46 ~GCqS~vWl~~~~~~~~-~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl 124 (146) +.|--.|.|...+++.+ .. -+.|.+..=+ |...-++++++.+.|+|.+|+..++...+++.++ +.|+|..-- T Consensus 35 p~CGD~v~i~l~i~~~~~I~--di~f~~~GCa-is~Asas~~~e~i~Gkt~~ea~~i~~~~i~e~l~----~~p~r~~Ca 107 (134) T d1r9pa_ 35 PACGDVMQLQIKVDDNGIIE--DAKFKTYGCG-SAIASSSLITEWVKGKSLEEAGAIKNSQIAEELE----LPPVKVHCS 107 (134) T ss_dssp TTTTEEEEEEEEECSSSBEE--EEEEEEESSS-SHHHHHHHHHHHSSSSBHHHHTTSHHHHHHHHHT----CCSTTHHHH T ss_pred CCCCCEEEEEEEECCCCEEE--EEEEEECCCC-CCHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHC----CCCCHHHHH T ss_conf 77463799999976985277--7889830686-0076999999999727898999850367888623----787204999 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999963 Q gi|254780998|r 125 YTIVNKIQDLTQEYLNV 141 (146) Q Consensus 125 ~~m~~~ik~~a~~~l~~ 141 (146) .--..-++....+|.++ T Consensus 108 ~L~~~al~~al~~y~~k 124 (134) T d1r9pa_ 108 ILAEDAIKAAIADYKAK 124 (134) T ss_dssp HHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999999985 No 5 >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Probab=56.09 E-value=4.5 Score=18.59 Aligned_cols=36 Identities=11% Similarity=-0.047 Sum_probs=29.5 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 87999941626-9999999999999759988999807 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +...+.|.|=| ++|-|+++++.+.+-..++.+|+++ T Consensus 242 ~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~ 278 (309) T d2ixta1 242 GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSN 278 (309) T ss_dssp SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH T ss_pred CCEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 6202348531247899999999987889999999999 No 6 >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=53.81 E-value=5.1 Score=18.24 Aligned_cols=35 Identities=9% Similarity=0.135 Sum_probs=29.0 Q ss_pred EEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 7999941626-9999999999999759988999807 Q gi|254780998|r 67 IMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 67 ~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) ...+.|.|-| ++|-|+++++.+.+...++.||+++ T Consensus 253 ~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~ 288 (334) T d1p8ja2 253 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHL 288 (334) T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 247887600452789999999976889999999999 No 7 >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Probab=52.01 E-value=5.7 Score=17.93 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=29.4 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 87999941626-9999999999999759988999807 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +...+.|.|=| ++|-|+++++.+.+...+|.+|+++ T Consensus 212 ~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~ 248 (274) T d1r0re_ 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNR 248 (274) T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 8586068752678899999999987889999999999 No 8 >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Probab=49.79 E-value=6.5 Score=17.61 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=29.0 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 87999941626-9999999999999759988999807 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +...+.|.|=| ++|-|+++++.+.+-..+|++|.++ T Consensus 207 ~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~ 243 (269) T d1gcia_ 207 TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNH 243 (269) T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 6584178416789999999999987889999999999 No 9 >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Probab=46.19 E-value=7.8 Score=17.11 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=26.9 Q ss_pred EEECCH-HHHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 994162-69999999999999759988999807 Q gi|254780998|r 70 FYAVSD-SQIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 70 f~~dSd-a~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +.|.|= |+.|.|.++||.+.+-..+|++|+++ T Consensus 365 ~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~ 397 (435) T d1v6ca_ 365 YNGTSMATPHVSGVATLVWSYHPECSASQVRAA 397 (435) T ss_dssp ECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHH T ss_pred ECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 855899899999999999998889999999999 No 10 >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Probab=42.71 E-value=9.8 Score=16.48 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=28.3 Q ss_pred EEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 7999941626-9999999999999759988999807 Q gi|254780998|r 67 IMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 67 ~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) .-.+.|.|-| ++|-|.++++...+-..++.+|.++ T Consensus 214 ~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~ 249 (281) T d1to2e_ 214 YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSS 249 (281) T ss_dssp EEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH T ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 671068541688899999999987879999999999 No 11 >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Probab=40.43 E-value=11 Score=16.16 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=29.3 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 87999941626-9999999999999759988999807 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) +--.+.|.|=| ++|-|.+||+.+.+-..+|.+|.++ T Consensus 373 ~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~ 409 (671) T d1r6va_ 373 TYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKL 409 (671) T ss_dssp CEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH T ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 0664257778789999999999988889999999999 No 12 >d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Probab=35.21 E-value=9 Score=16.69 Aligned_cols=29 Identities=24% Similarity=0.163 Sum_probs=21.6 Q ss_pred CCHHHHHHHHHHHHHHHH----CCCCHHHHHHC Q ss_conf 162699999999999997----59988999807 Q gi|254780998|r 73 VSDSQIVCGLLYIVKSIY----AHKKISEILKM 101 (146) Q Consensus 73 dSda~IvkGl~~ll~~~~----~g~t~~eI~~~ 101 (146) .|+-+=++||+.+.|..+ .|+||+||+++ T Consensus 21 AAnyL~I~~Lldl~c~~vA~~ikgKt~eeiR~~ 53 (55) T d1fs1b1 21 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKT 53 (55) T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHH T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 998819478999999999998869999999877 No 13 >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=32.98 E-value=14 Score=15.42 Aligned_cols=35 Identities=6% Similarity=0.061 Sum_probs=28.8 Q ss_pred EEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC Q ss_conf 7999941626-9999999999999759988999807 Q gi|254780998|r 67 IMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM 101 (146) Q Consensus 67 ~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~ 101 (146) ...+.|.|-| ++|-|+++++.+.+-..++.||..+ T Consensus 257 ~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~ 292 (339) T d2id4a2 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYL 292 (339) T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 345788752178888999999987879999999999 No 14 >d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=31.23 E-value=13 Score=15.70 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=24.6 Q ss_pred CHHHHHHHHHHHHHHH----HCCCCHHHHHHCCHHHHHHHHCCHHCCCHH Q ss_conf 6269999999999999----759988999807989999870904316942 Q gi|254780998|r 74 SDSQIVCGLLYIVKSI----YAHKKISEILKMDSLTILQHLGLTENLSQK 119 (146) Q Consensus 74 Sda~IvkGl~~ll~~~----~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~ 119 (146) |+-+=++||+.+.|.. ..|+||+||+++ | |+...+||. T Consensus 23 AnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~----f----~I~~D~t~e 64 (70) T d1nexa1 23 ANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRT----F----NIVNDFTPE 64 (70) T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHH----H----TCCCCCCHH T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH----H----CCCCCCCHH T ss_conf 98709578999999999999825999999999----5----999999988 No 15 >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Probab=23.91 E-value=16 Score=15.11 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=5.3 Q ss_pred HHHCCCCHHHHHHHHH Q ss_conf 8750999899999999 Q gi|254780998|r 10 DMEMIEDLHDRYHYLI 25 (146) Q Consensus 10 ~f~~~~d~~~ry~~Li 25 (146) .++.+.|+..|-+||+ T Consensus 57 Ay~vL~dp~~R~~Yll 72 (76) T d1fpoa1 57 AWQTLRHPLMRAEYLL 72 (76) T ss_dssp HHHHHHSHHHHHHHHH T ss_pred HHHHHCCHHHHHHHHH T ss_conf 9999199999999998 No 16 >d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]} Probab=22.61 E-value=22 Score=14.27 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHH-HHCCCCHHHHHHCCHHHHHHHH Q ss_conf 999999999999-9759988999807989999870 Q gi|254780998|r 77 QIVCGLLYIVKS-IYAHKKISEILKMDSLTILQHL 110 (146) Q Consensus 77 ~IvkGl~~ll~~-~~~g~t~~eI~~~d~~~f~~~l 110 (146) .|..+++.++.+ .-+|++++++.--||..|-++| T Consensus 36 ~il~dil~lleea~~~G~~v~ev~G~D~~~f~del 70 (90) T d2o4ta1 36 GLLSEILGFFEEGAAAGKGVLDVTGTDVAAFCDAL 70 (90) T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHCSCHHHHHHHT T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHH T ss_conf 99999999999999849979999597999999999 No 17 >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Probab=22.31 E-value=21 Score=14.43 Aligned_cols=35 Identities=14% Similarity=0.002 Sum_probs=27.3 Q ss_pred CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 87999941626-999999999999975998899980 Q gi|254780998|r 66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILK 100 (146) Q Consensus 66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~ 100 (146) +...+.|.|=| ++|-|+++++...+...+++++.. T Consensus 216 ~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~ 251 (279) T d2pwaa1 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY 251 (279) T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 666788010078999999999987389985999999 No 18 >d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]} Probab=21.96 E-value=23 Score=14.18 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHH-HHCCCCHHHHHHCCHHHHHHHH Q ss_conf 999999999999-9759988999807989999870 Q gi|254780998|r 77 QIVCGLLYIVKS-IYAHKKISEILKMDSLTILQHL 110 (146) Q Consensus 77 ~IvkGl~~ll~~-~~~g~t~~eI~~~d~~~f~~~l 110 (146) .|..+++.++.+ .-+|+++++|.--||..|-++| T Consensus 40 ~il~dil~l~eea~~~G~~v~ev~G~D~~~f~del 74 (82) T d2o3la1 40 HIQYELIDLFEAGAAEGRQVLDITGEDVASFADEL 74 (82) T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHCSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHH T ss_conf 99999999999999859979999598999999999 No 19 >d1pdaa2 d.50.2.1 (A:220-307) Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=21.11 E-value=24 Score=14.08 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=18.1 Q ss_pred HHHCCCCEEEEEEEEECCCCCCCCEEEEEE Q ss_conf 502265601678873046545488799994 Q gi|254780998|r 43 NIVAGCMSKLWMVIEWENKGDQDPIMIFYA 72 (146) Q Consensus 43 ~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~ 72 (146) .+=-||++++-..+.+++ +.+++++ T Consensus 18 ~L~ggC~~PIga~A~~~~-----~~i~l~~ 42 (88) T d1pdaa2 18 RLEGACQVPIGSYAELID-----GEIWLRG 42 (88) T ss_dssp HTTCCTTSCEEEEEEEET-----TEEEEEE T ss_pred HHCCCCCCCCCEEEEEEC-----CEEEEEE T ss_conf 838999886111359988-----8799999 No 20 >d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]} Probab=20.13 E-value=25 Score=13.95 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=56.5 Q ss_pred HHHHHHHHHCC---CCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 99999985089---999568681550226560167887304654548879999416269999999999999759988999 Q gi|254780998|r 22 HYLIELGKKLP---LFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEI 98 (146) Q Consensus 22 ~~Li~lgk~l~---~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~eI 98 (146) +.|+++.+... .+++.. .-...-+-|-..+=|...+++... ..+.|.+.+=| |...=++++++...|++.+++ T Consensus 7 ~~Ildh~~nP~n~g~l~~~~-~~~~~Np~CGD~i~i~l~i~~~~I--~di~f~~~GCa-i~~ASasil~e~i~gk~~~e~ 82 (136) T d1su0b_ 7 AVVADHSKRPHHHGQLDGVE-AVQLNNPTCGDVISLTVKFDEDKI--EDIAFAGNGCT-ISTASSSMMTDAVIGKSKEEA 82 (136) T ss_dssp HHHHHHHHSCSSBSCCTTCC-CEEEECSSSCCEEEEEEEESSSSE--EEEEEEEECCH-HHHHHHHHHHHHHTTCCHHHH T ss_pred HHHHHHHHCCCCCCCCCCCC-EEEECCCCCCCEEEEEEEECCCEE--EEEEEEECCCH-HHHHHHHHHHHHHHCCCHHHH T ss_conf 99999975979899899998-363367787887999999758814--67787751677-989999999999957899999 Q ss_pred HHCCHHHHHHHH Q ss_conf 807989999870 Q gi|254780998|r 99 LKMDSLTILQHL 110 (146) Q Consensus 99 ~~~d~~~f~~~l 110 (146) ..+ ...|.+-+ T Consensus 83 ~~l-~~~~~~~l 93 (136) T d1su0b_ 83 LAL-ADIFSEMV 93 (136) T ss_dssp HHH-HHHHHHHT T ss_pred HHH-HHHHHHHH T ss_conf 999-99999987 Done!