Query         gi|254780998|ref|YP_003065411.1| hypothetical protein CLIBASIA_04495 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 146
No_of_seqs    106 out of 928
Neff          6.3 
Searched_HMMs 13730
Date          Wed Jun  1 11:05:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780998.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ni7a_ d.224.1.1 (A:) Hypothe 100.0       0       0  312.8  13.0  134    2-139    15-148 (149)
  2 d1mzga_ d.224.1.1 (A:) SufE (Y 100.0 1.4E-45       0  304.2  15.8  137    3-143     4-140 (144)
  3 d1wfza_ d.224.1.2 (A:) Iron-su  91.6    0.44 3.2E-05   24.9  12.0   90   46-141    31-120 (130)
  4 d1r9pa_ d.224.1.2 (A:) NifU-li  89.2    0.72 5.2E-05   23.6   9.3   89   46-141    35-124 (134)
  5 d2ixta1 c.41.1.1 (A:1-309) Sph  56.1     4.5 0.00033   18.6   3.1   36   66-101   242-278 (309)
  6 d1p8ja2 c.41.1.1 (A:109-442) F  53.8     5.1 0.00037   18.2   3.1   35   67-101   253-288 (334)
  7 d1r0re_ c.41.1.1 (E:) Subtilis  52.0     5.7 0.00042   17.9   3.1   36   66-101   212-248 (274)
  8 d1gcia_ c.41.1.1 (A:) Subtilis  49.8     6.5 0.00047   17.6   3.1   36   66-101   207-243 (269)
  9 d1v6ca_ c.41.1.1 (A:) Alkaline  46.2     7.8 0.00056   17.1   3.0   32   70-101   365-397 (435)
 10 d1to2e_ c.41.1.1 (E:) Subtilis  42.7     9.8 0.00071   16.5   3.1   35   67-101   214-249 (281)
 11 d1r6va_ c.41.1.1 (A:) Fervidol  40.4      11  0.0008   16.2   3.1   36   66-101   373-409 (671)
 12 d1fs1b1 a.157.1.1 (B:86-140) C  35.2       9 0.00066   16.7   2.0   29   73-101    21-53  (55)
 13 d2id4a2 c.41.1.1 (A:122-460) K  33.0      14  0.0011   15.4   3.1   35   67-101   257-292 (339)
 14 d1nexa1 a.157.1.1 (A:116-185)   31.2      13 0.00095   15.7   2.2   38   74-119    23-64  (70)
 15 d1fpoa1 a.2.3.1 (A:1-76) HSC20  23.9      16  0.0012   15.1   1.6   16   10-25     57-72  (76)
 16 d2o4ta1 a.69.4.1 (A:16-105) Un  22.6      22  0.0016   14.3   5.1   34   77-110    36-70  (90)
 17 d2pwaa1 c.41.1.1 (A:1-279) Pro  22.3      21  0.0015   14.4   1.9   35   66-100   216-251 (279)
 18 d2o3la1 a.69.4.1 (A:14-95) Hyp  22.0      23  0.0017   14.2   4.8   34   77-110    40-74  (82)
 19 d1pdaa2 d.50.2.1 (A:220-307) P  21.1      24  0.0017   14.1   3.2   25   43-72     18-42  (88)
 20 d1su0b_ d.224.1.2 (B:) IscU ho  20.1      25  0.0018   13.9   8.1   84   22-110     7-93  (136)

No 1  
>d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=312.75  Aligned_cols=134  Identities=28%  Similarity=0.509  Sum_probs=129.4

Q ss_pred             CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHH
Q ss_conf             88899999875099989999999999850899995686815502265601678873046545488799994162699999
Q gi|254780998|r    2 IPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCG   81 (146)
Q Consensus         2 ~~l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkG   81 (146)
                      |++++|+++|+.|+||++||+|||++||++|++|+++|+++|+|+||||+|||+++.+    ++|+++|+|||||.||||
T Consensus        15 ~~~~~i~e~f~~~~dweery~~Li~lgk~l~~l~e~~k~d~~~V~GCqS~vWl~~~~~----~~g~~~f~adSDa~IvkG   90 (149)
T d1ni7a_          15 VTAETLRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTVA----ENGKMHFFGDSEGRIVRG   90 (149)
T ss_dssp             SCHHHHHHHHTTCCSHHHHHHHHHHHHHHSCCCCHHHHHHSEEECSSSSCEEEECCCC----SSSCCCCEEEESSHHHHH
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHCHHHEECCCEEEEEEEEEEC----CCCEEEEEECCCHHHHHH
T ss_conf             5799999999818999999999999985199999689455544235346789988871----698799995153799999


Q ss_pred             HHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999975998899980798999987090431694289999999999999999999
Q gi|254780998|r   82 LLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEYL  139 (146)
Q Consensus        82 l~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~l  139 (146)
                      |++||+.+|||+||+||++++|.+|++++||++||||+|+|||++|+++||.+|++++
T Consensus        91 l~~iL~~~~sg~t~~eI~~~~~~~~~~~lGL~~~Ls~sR~NGl~~mi~~Ik~~a~~~l  148 (149)
T d1ni7a_          91 LLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAIIAATKQVL  148 (149)
T ss_dssp             HHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999987999899985698999987797401770289999999999999999973


No 2  
>d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=1.4e-45  Score=304.23  Aligned_cols=137  Identities=26%  Similarity=0.477  Sum_probs=130.1

Q ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHH
Q ss_conf             88999998750999899999999998508999956868155022656016788730465454887999941626999999
Q gi|254780998|r    3 PINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGL   82 (146)
Q Consensus         3 ~l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl   82 (146)
                      +.++|+++|+.|+||++||+|||++||++|++|+++|+++|+|+||||+|||.++.+    .+++++|+|||||.||||+
T Consensus         4 ~~~~l~~~f~~~~dwe~ry~~Li~lgk~lp~lp~~~k~~~n~V~GCqS~vWl~~~~~----~~~~~~f~~dSda~IvkGl   79 (144)
T d1mzga_           4 DKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSPQNSIQGCQSQVWIVMRQN----AQGIIELQGDSDAAIVKGL   79 (144)
T ss_dssp             CHHHHHHHHHHCSSHHHHHHHHHHHHHHSCCCCTTTSSGGGEECSSSSCEEEEEEEC----SSSCEEEEEEESSHHHHHH
T ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHEECCCEEEEEEEEEEC----CCCCEEEEEECCHHHHHHH
T ss_conf             789999998747999999999999984299999689445633033135677765643----6786699862733999999


Q ss_pred             HHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999759988999807989999870904316942899999999999999999996331
Q gi|254780998|r   83 LYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQEYLNVHI  143 (146)
Q Consensus        83 ~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~a~~~l~~~~  143 (146)
                      ++||+.+|||+||+||+++||.+|++++||.++|||+|+|||.+|+++||.+|+++...+-
T Consensus        80 ~ail~~~~~g~t~~eI~~~d~~~~~~~lgL~~~Ls~sR~NGl~~mi~~ik~~A~~~~~~~~  140 (144)
T d1mzga_          80 IAVVFILYDQMTPQDIVNFDVRPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALSLEHH  140 (144)
T ss_dssp             HHHHHHHTTTCCHHHHHHCCCHHHHHHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHCCCCHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999879999999846969999885874006841889999999999999999999876


No 3  
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=91.62  E-value=0.44  Score=24.87  Aligned_cols=90  Identities=14%  Similarity=0.149  Sum_probs=66.6

Q ss_pred             CCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHH
Q ss_conf             26560167887304654548879999416269999999999999759988999807989999870904316942899999
Q gi|254780998|r   46 AGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLY  125 (146)
Q Consensus        46 ~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~  125 (146)
                      +.|=-.+.|...+++.... ..+.|.++.=+ |...-++++++.+.|++.+|+..++..++++.+|    |.|.|.+=-.
T Consensus        31 P~CGD~i~i~l~v~~~~~I-~di~F~~~GC~-is~AsaS~~tel~~Gkt~~ea~~i~~~~i~~~l~----l~p~R~~CA~  104 (130)
T d1wfza_          31 PACGDVMKLQIQVDEKGKI-VDARFKTFGCG-SAIASSSLATEWVKGKTVEEALTIKNTDIAKELC----LPPVKLHCSM  104 (130)
T ss_dssp             TTTTEEEEEEEEECSSSBE-EEEEEECCSCH-HHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHHT----CCGGGHHHHH
T ss_pred             CCCCCEEEEEEEECCCCEE-EEEEEEEECCC-HHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHCC----CCCCHHHHHH
T ss_conf             8757589999995589939-89999842783-5477999999998616889987317399998727----9962135999


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999963
Q gi|254780998|r  126 TIVNKIQDLTQEYLNV  141 (146)
Q Consensus       126 ~m~~~ik~~a~~~l~~  141 (146)
                      --...++.....|..+
T Consensus       105 La~~aL~~Al~~y~~k  120 (130)
T d1wfza_         105 LAEDAIKAALADYKLK  120 (130)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999974


No 4  
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}
Probab=89.19  E-value=0.72  Score=23.56  Aligned_cols=89  Identities=12%  Similarity=0.134  Sum_probs=62.5

Q ss_pred             CCCCEEEEEEEEECCCC-CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHH
Q ss_conf             26560167887304654-54887999941626999999999999975998899980798999987090431694289999
Q gi|254780998|r   46 AGCMSKLWMVIEWENKG-DQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGL  124 (146)
Q Consensus        46 ~GCqS~vWl~~~~~~~~-~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl  124 (146)
                      +.|--.|.|...+++.+ ..  -+.|.+..=+ |...-++++++.+.|+|.+|+..++...+++.++    +.|+|..--
T Consensus        35 p~CGD~v~i~l~i~~~~~I~--di~f~~~GCa-is~Asas~~~e~i~Gkt~~ea~~i~~~~i~e~l~----~~p~r~~Ca  107 (134)
T d1r9pa_          35 PACGDVMQLQIKVDDNGIIE--DAKFKTYGCG-SAIASSSLITEWVKGKSLEEAGAIKNSQIAEELE----LPPVKVHCS  107 (134)
T ss_dssp             TTTTEEEEEEEEECSSSBEE--EEEEEEESSS-SHHHHHHHHHHHSSSSBHHHHTTSHHHHHHHHHT----CCSTTHHHH
T ss_pred             CCCCCEEEEEEEECCCCEEE--EEEEEECCCC-CCHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHC----CCCCHHHHH
T ss_conf             77463799999976985277--7889830686-0076999999999727898999850367888623----787204999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999963
Q gi|254780998|r  125 YTIVNKIQDLTQEYLNV  141 (146)
Q Consensus       125 ~~m~~~ik~~a~~~l~~  141 (146)
                      .--..-++....+|.++
T Consensus       108 ~L~~~al~~al~~y~~k  124 (134)
T d1r9pa_         108 ILAEDAIKAAIADYKAK  124 (134)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999985


No 5  
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}
Probab=56.09  E-value=4.5  Score=18.59  Aligned_cols=36  Identities=11%  Similarity=-0.047  Sum_probs=29.5

Q ss_pred             CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf             87999941626-9999999999999759988999807
Q gi|254780998|r   66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM  101 (146)
Q Consensus        66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~  101 (146)
                      +...+.|.|=| ++|-|+++++.+.+-..++.+|+++
T Consensus       242 ~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~  278 (309)
T d2ixta1         242 GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSN  278 (309)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred             CCEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             6202348531247899999999987889999999999


No 6  
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=53.81  E-value=5.1  Score=18.24  Aligned_cols=35  Identities=9%  Similarity=0.135  Sum_probs=29.0

Q ss_pred             EEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf             7999941626-9999999999999759988999807
Q gi|254780998|r   67 IMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM  101 (146)
Q Consensus        67 ~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~  101 (146)
                      ...+.|.|-| ++|-|+++++.+.+...++.||+++
T Consensus       253 ~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~  288 (334)
T d1p8ja2         253 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHL  288 (334)
T ss_dssp             EEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             247887600452789999999976889999999999


No 7  
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}
Probab=52.01  E-value=5.7  Score=17.93  Aligned_cols=36  Identities=14%  Similarity=0.070  Sum_probs=29.4

Q ss_pred             CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf             87999941626-9999999999999759988999807
Q gi|254780998|r   66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM  101 (146)
Q Consensus        66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~  101 (146)
                      +...+.|.|=| ++|-|+++++.+.+...+|.+|+++
T Consensus       212 ~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~  248 (274)
T d1r0re_         212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNR  248 (274)
T ss_dssp             EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             8586068752678899999999987889999999999


No 8  
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Probab=49.79  E-value=6.5  Score=17.61  Aligned_cols=36  Identities=17%  Similarity=0.038  Sum_probs=29.0

Q ss_pred             CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf             87999941626-9999999999999759988999807
Q gi|254780998|r   66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM  101 (146)
Q Consensus        66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~  101 (146)
                      +...+.|.|=| ++|-|+++++.+.+-..+|++|.++
T Consensus       207 ~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~  243 (269)
T d1gcia_         207 TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNH  243 (269)
T ss_dssp             EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             CEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             6584178416789999999999987889999999999


No 9  
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Probab=46.19  E-value=7.8  Score=17.11  Aligned_cols=32  Identities=19%  Similarity=0.150  Sum_probs=26.9

Q ss_pred             EEECCH-HHHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf             994162-69999999999999759988999807
Q gi|254780998|r   70 FYAVSD-SQIVCGLLYIVKSIYAHKKISEILKM  101 (146)
Q Consensus        70 f~~dSd-a~IvkGl~~ll~~~~~g~t~~eI~~~  101 (146)
                      +.|.|= |+.|.|.++||.+.+-..+|++|+++
T Consensus       365 ~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~  397 (435)
T d1v6ca_         365 YNGTSMATPHVSGVATLVWSYHPECSASQVRAA  397 (435)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             855899899999999999998889999999999


No 10 
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}
Probab=42.71  E-value=9.8  Score=16.48  Aligned_cols=35  Identities=11%  Similarity=0.029  Sum_probs=28.3

Q ss_pred             EEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf             7999941626-9999999999999759988999807
Q gi|254780998|r   67 IMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM  101 (146)
Q Consensus        67 ~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~  101 (146)
                      .-.+.|.|-| ++|-|.++++...+-..++.+|.++
T Consensus       214 ~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~  249 (281)
T d1to2e_         214 YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSS  249 (281)
T ss_dssp             EEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             671068541688899999999987879999999999


No 11 
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}
Probab=40.43  E-value=11  Score=16.16  Aligned_cols=36  Identities=17%  Similarity=0.208  Sum_probs=29.3

Q ss_pred             CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf             87999941626-9999999999999759988999807
Q gi|254780998|r   66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM  101 (146)
Q Consensus        66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~  101 (146)
                      +--.+.|.|=| ++|-|.+||+.+.+-..+|.+|.++
T Consensus       373 ~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~  409 (671)
T d1r6va_         373 TYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKL  409 (671)
T ss_dssp             CEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             0664257778789999999999988889999999999


No 12 
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.21  E-value=9  Score=16.69  Aligned_cols=29  Identities=24%  Similarity=0.163  Sum_probs=21.6

Q ss_pred             CCHHHHHHHHHHHHHHHH----CCCCHHHHHHC
Q ss_conf             162699999999999997----59988999807
Q gi|254780998|r   73 VSDSQIVCGLLYIVKSIY----AHKKISEILKM  101 (146)
Q Consensus        73 dSda~IvkGl~~ll~~~~----~g~t~~eI~~~  101 (146)
                      .|+-+=++||+.+.|..+    .|+||+||+++
T Consensus        21 AAnyL~I~~Lldl~c~~vA~~ikgKt~eeiR~~   53 (55)
T d1fs1b1          21 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKT   53 (55)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             998819478999999999998869999999877


No 13 
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.98  E-value=14  Score=15.42  Aligned_cols=35  Identities=6%  Similarity=0.061  Sum_probs=28.8

Q ss_pred             EEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf             7999941626-9999999999999759988999807
Q gi|254780998|r   67 IMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILKM  101 (146)
Q Consensus        67 ~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~~  101 (146)
                      ...+.|.|-| ++|-|+++++.+.+-..++.||..+
T Consensus       257 ~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~  292 (339)
T d2id4a2         257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYL  292 (339)
T ss_dssp             EEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             345788752178888999999987879999999999


No 14 
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.23  E-value=13  Score=15.70  Aligned_cols=38  Identities=11%  Similarity=0.127  Sum_probs=24.6

Q ss_pred             CHHHHHHHHHHHHHHH----HCCCCHHHHHHCCHHHHHHHHCCHHCCCHH
Q ss_conf             6269999999999999----759988999807989999870904316942
Q gi|254780998|r   74 SDSQIVCGLLYIVKSI----YAHKKISEILKMDSLTILQHLGLTENLSQK  119 (146)
Q Consensus        74 Sda~IvkGl~~ll~~~----~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~  119 (146)
                      |+-+=++||+.+.|..    ..|+||+||+++    |    |+...+||.
T Consensus        23 AnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~----f----~I~~D~t~e   64 (70)
T d1nexa1          23 ANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRT----F----NIVNDFTPE   64 (70)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHH----H----TCCCCCCHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH----H----CCCCCCCHH
T ss_conf             98709578999999999999825999999999----5----999999988


No 15 
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=23.91  E-value=16  Score=15.11  Aligned_cols=16  Identities=19%  Similarity=0.287  Sum_probs=5.3

Q ss_pred             HHHCCCCHHHHHHHHH
Q ss_conf             8750999899999999
Q gi|254780998|r   10 DMEMIEDLHDRYHYLI   25 (146)
Q Consensus        10 ~f~~~~d~~~ry~~Li   25 (146)
                      .++.+.|+..|-+||+
T Consensus        57 Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1          57 AWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             HHHHHHSHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHH
T ss_conf             9999199999999998


No 16 
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]}
Probab=22.61  E-value=22  Score=14.27  Aligned_cols=34  Identities=15%  Similarity=0.186  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHH-HHCCCCHHHHHHCCHHHHHHHH
Q ss_conf             999999999999-9759988999807989999870
Q gi|254780998|r   77 QIVCGLLYIVKS-IYAHKKISEILKMDSLTILQHL  110 (146)
Q Consensus        77 ~IvkGl~~ll~~-~~~g~t~~eI~~~d~~~f~~~l  110 (146)
                      .|..+++.++.+ .-+|++++++.--||..|-++|
T Consensus        36 ~il~dil~lleea~~~G~~v~ev~G~D~~~f~del   70 (90)
T d2o4ta1          36 GLLSEILGFFEEGAAAGKGVLDVTGTDVAAFCDAL   70 (90)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHCSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHH
T ss_conf             99999999999999849979999597999999999


No 17 
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}
Probab=22.31  E-value=21  Score=14.43  Aligned_cols=35  Identities=14%  Similarity=0.002  Sum_probs=27.3

Q ss_pred             CEEEEEECCHH-HHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             87999941626-999999999999975998899980
Q gi|254780998|r   66 PIMIFYAVSDS-QIVCGLLYIVKSIYAHKKISEILK  100 (146)
Q Consensus        66 ~~~~f~~dSda-~IvkGl~~ll~~~~~g~t~~eI~~  100 (146)
                      +...+.|.|=| ++|-|+++++...+...+++++..
T Consensus       216 ~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~  251 (279)
T d2pwaa1         216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY  251 (279)
T ss_dssp             EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             666788010078999999999987389985999999


No 18 
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]}
Probab=21.96  E-value=23  Score=14.18  Aligned_cols=34  Identities=15%  Similarity=0.235  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHH-HHCCCCHHHHHHCCHHHHHHHH
Q ss_conf             999999999999-9759988999807989999870
Q gi|254780998|r   77 QIVCGLLYIVKS-IYAHKKISEILKMDSLTILQHL  110 (146)
Q Consensus        77 ~IvkGl~~ll~~-~~~g~t~~eI~~~d~~~f~~~l  110 (146)
                      .|..+++.++.+ .-+|+++++|.--||..|-++|
T Consensus        40 ~il~dil~l~eea~~~G~~v~ev~G~D~~~f~del   74 (82)
T d2o3la1          40 HIQYELIDLFEAGAAEGRQVLDITGEDVASFADEL   74 (82)
T ss_dssp             HHHHHHHHHHHHHHHHTCCHHHHHCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHH
T ss_conf             99999999999999859979999598999999999


No 19 
>d1pdaa2 d.50.2.1 (A:220-307) Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.11  E-value=24  Score=14.08  Aligned_cols=25  Identities=8%  Similarity=0.084  Sum_probs=18.1

Q ss_pred             HHHCCCCEEEEEEEEECCCCCCCCEEEEEE
Q ss_conf             502265601678873046545488799994
Q gi|254780998|r   43 NIVAGCMSKLWMVIEWENKGDQDPIMIFYA   72 (146)
Q Consensus        43 ~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~   72 (146)
                      .+=-||++++-..+.+++     +.+++++
T Consensus        18 ~L~ggC~~PIga~A~~~~-----~~i~l~~   42 (88)
T d1pdaa2          18 RLEGACQVPIGSYAELID-----GEIWLRG   42 (88)
T ss_dssp             HTTCCTTSCEEEEEEEET-----TEEEEEE
T ss_pred             HHCCCCCCCCCEEEEEEC-----CEEEEEE
T ss_conf             838999886111359988-----8799999


No 20 
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=20.13  E-value=25  Score=13.95  Aligned_cols=84  Identities=10%  Similarity=0.040  Sum_probs=56.5

Q ss_pred             HHHHHHHHHCC---CCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             99999985089---999568681550226560167887304654548879999416269999999999999759988999
Q gi|254780998|r   22 HYLIELGKKLP---LFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEI   98 (146)
Q Consensus        22 ~~Li~lgk~l~---~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkGl~~ll~~~~~g~t~~eI   98 (146)
                      +.|+++.+...   .+++.. .-...-+-|-..+=|...+++...  ..+.|.+.+=| |...=++++++...|++.+++
T Consensus         7 ~~Ildh~~nP~n~g~l~~~~-~~~~~Np~CGD~i~i~l~i~~~~I--~di~f~~~GCa-i~~ASasil~e~i~gk~~~e~   82 (136)
T d1su0b_           7 AVVADHSKRPHHHGQLDGVE-AVQLNNPTCGDVISLTVKFDEDKI--EDIAFAGNGCT-ISTASSSMMTDAVIGKSKEEA   82 (136)
T ss_dssp             HHHHHHHHSCSSBSCCTTCC-CEEEECSSSCCEEEEEEEESSSSE--EEEEEEEECCH-HHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCC-EEEECCCCCCCEEEEEEEECCCEE--EEEEEEECCCH-HHHHHHHHHHHHHHCCCHHHH
T ss_conf             99999975979899899998-363367787887999999758814--67787751677-989999999999957899999


Q ss_pred             HHCCHHHHHHHH
Q ss_conf             807989999870
Q gi|254780998|r   99 LKMDSLTILQHL  110 (146)
Q Consensus        99 ~~~d~~~f~~~l  110 (146)
                      ..+ ...|.+-+
T Consensus        83 ~~l-~~~~~~~l   93 (136)
T d1su0b_          83 LAL-ADIFSEMV   93 (136)
T ss_dssp             HHH-HHHHHHHT
T ss_pred             HHH-HHHHHHHH
T ss_conf             999-99999987


Done!