RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780998|ref|YP_003065411.1| hypothetical protein
CLIBASIA_04495 [Candidatus Liberibacter asiaticus str. psy62]
(146 letters)
>gnl|CDD|32349 COG2166, COG2166, SufE protein probably involved in Fe-S center
assembly [General function prediction only].
Length = 144
Score = 116 bits (292), Expect = 2e-27
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 2 IPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENK 61
+ I+ED + + DRY YLIELGK+LP P+E ++N V GC S++W+V E +
Sbjct: 10 KTLEKIVEDFAELTNWEDRYRYLIELGKQLPPLPEELRAEENPVPGCQSQVWLVTEQND- 68
Query: 62 GDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRM 121
D + F+ SD++IV GLL I+ + Y+ K +EIL D L + LGL ++LS R
Sbjct: 69 ---DGTLHFFGDSDARIVRGLLAILLAAYSGKTAAEILAFDPLDFFEELGLAQHLSPSRS 125
Query: 122 NGLYTIVNKIQDLTQEYL 139
NGL ++ +I+ + L
Sbjct: 126 NGLEAMLKRIKRKAAQAL 143
>gnl|CDD|111544 pfam02657, SufE, Fe-S metabolism associated domain. This family
consists of the SufE-related proteins. These have been
implicated in Fe-S metabolism and export).
Length = 125
Score = 85.9 bits (213), Expect = 4e-18
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 7 IIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDP 66
++E + + D+Y L+ELGK+LP P E + N V GC S+LW+ + G
Sbjct: 1 VVELFAEVTNWEDKYRQLLELGKELPALPDELLAQANEVQGCQSQLWLHYDVSEDG---- 56
Query: 67 IMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYT 126
I+ F+ S+++IV GL ++ + Y K +EIL D + LGL ++LS R+NGL
Sbjct: 57 IVHFFGDSEARIVRGLAALLFAGYDGKTPAEILTFDPDFF-EELGLAQHLSPSRLNGLEA 115
Query: 127 IVNKIQDLT 135
+ +I+
Sbjct: 116 LFARIKRKA 124
>gnl|CDD|38823 KOG3617, KOG3617, KOG3617, WD40 and TPR repeat-containing protein
[General function prediction only].
Length = 1416
Score = 30.8 bits (69), Expect = 0.14
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 7 IIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEW 58
+IED ++ Y L EL KK+P + + V +L M +E
Sbjct: 1336 LIEDHVSRKNYKPAYRALTELQKKVPNVDLSTFVETSTVDKVCDELEMRLER 1387
>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C.
Serine/Threonine Kinases (STKs), Classical (or
Conventional) Protein Kinase C (cPKC) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. cPKCs contain a
calcium-binding C2 region in their regulatory domain.
There are four cPKC isoforms, named alpha, betaI,
betaII, and gamma. cPKCs are potent kinases for
histones, myelin basic protein, and protamine. PKC-gamma
is mainly expressed in neuronal tissues. It plays a role
in protection from ischemia.
Length = 324
Score = 28.2 bits (63), Expect = 0.93
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 22/69 (31%)
Query: 49 MSKLWMVIEWENKGD-----------QDPIMIFYAVSDSQIVCGLLYIVKSIYAHKK--I 95
M +L+ V+E+ N GD ++P +FYA ++I GL ++ H K I
Sbjct: 73 MDRLYFVMEYVNGGDLMYHIQQVGKFKEPHAVFYA---AEIAIGLFFL------HSKGII 123
Query: 96 SEILKMDSL 104
LK+D++
Sbjct: 124 YRDLKLDNV 132
>gnl|CDD|36311 KOG1095, KOG1095, KOG1095, Protein tyrosine kinase [Signal
transduction mechanisms].
Length = 1025
Score = 26.5 bits (58), Expect = 2.8
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 8 IEDMEMIEDLHDRYHYLIELGKKLPL--FPKEYMTDQNIVAGCMSKLWM--VIEWE 59
I D + D++D+ +Y LP+ P E + D + S +W V+ WE
Sbjct: 843 IADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDG--IFTSKSDVWSFGVLLWE 896
>gnl|CDD|73286 cd01907, GlxB, Glutamine amidotransferases class-II
(Gn-AT)_GlxB-type. GlxB is a glutamine
amidotransferase-like protein of unknown function found
in bacteria and archaea. GlxB has a structural fold
similar to that of other class II glutamine
amidotransferases including glucosamine-fructose
6-phosphate synthase (GLMS or GFAT), glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase), asparagine synthetase B (AsnB), beta lactam
synthetase (beta-LS) and glutamate synthase (GltS).
The GlxB fold is also somewhat similar to the Ntn
(N-terminal nucleophile) hydrolase fold of the
proteasomal alpha and beta subunits..
Length = 249
Score = 26.3 bits (58), Expect = 3.1
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 74 SDSQIVCGLLYIV--KSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIV 128
+D++++ L ++ K + I++M L L ++G +TI+
Sbjct: 134 TDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTII 190
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for
activity, while atypical PKCs only require PS. PKCs
phosphorylate and modify the activities of a wide
variety of cellular proteins including receptors,
enzymes, cytoskeletal proteins, transcription factors,
and other kinases. They play a central role in signal
transduction pathways that regulate cell migration and
polarity, proliferation, differentiation, and apoptosis.
Also included in this subfamily are the PKC-like
proteins, called PKNs.
Length = 318
Score = 25.4 bits (56), Expect = 5.5
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 18/67 (26%)
Query: 49 MSKLWMVIEWENKGD-----------QDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISE 97
+L+ V+E+ N GD +P FYA +IV GL + ++ I
Sbjct: 68 KDRLFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAA---EIVLGLQF----LHERGIIYR 120
Query: 98 ILKMDSL 104
LK+D++
Sbjct: 121 DLKLDNV 127
>gnl|CDD|35292 KOG0069, KOG0069, KOG0069, Glyoxylate/hydroxypyruvate reductase
(D-isomer-specific 2-hydroxy acid dehydrogenase
superfamily) [Energy production and conversion].
Length = 336
Score = 24.6 bits (53), Expect = 10.0
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 97 EILKMDSLTILQHLGLTENLSQKRM 121
+L +D++ IL H+G ++++M
Sbjct: 289 PLLTLDNVVILPHIGSATLETREKM 313
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.139 0.409
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,781,623
Number of extensions: 86672
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 16
Length of query: 146
Length of database: 6,263,737
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,426,972
Effective search space: 270045292
Effective search space used: 270045292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)