RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780998|ref|YP_003065411.1| hypothetical protein
CLIBASIA_04495 [Candidatus Liberibacter asiaticus str. psy62]
         (146 letters)



>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national
           institute of allergy and infectious diseases, niaid,
           hydrolase; 1.76A {Salmonella typhimurium LT2} PDB:
           1mzg_A (A:)
          Length = 141

 Score =  137 bits (348), Expect = 4e-34
 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 2   IPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENK 61
                ++ +     +  ++Y Y+IELG++L     +    QN + GC S++W+V+     
Sbjct: 8   PDKEKLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNPQNTIHGCQSQVWIVMRR--- 64

Query: 62  GDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRM 121
            + + I+     SD+ IV GL+ +V  +Y      +I+  D     + + L ++L+  R 
Sbjct: 65  -NANGIIELQGDSDAAIVKGLMAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTPSRS 123

Query: 122 NGLYTIVNKIQDLTQEY 138
            GL  ++  I+      
Sbjct: 124 QGLEAMIRAIRAKAATL 140


>1wlo_A SUFE protein; structural genomics, riken structural
           genomics/proteomics initiative, RSGI, unknown function;
           NMR {Thermus thermophilus HB8} (A:)
          Length = 136

 Score =  123 bits (310), Expect = 1e-29
 Identities = 23/141 (16%), Positives = 54/141 (38%), Gaps = 9/141 (6%)

Query: 1   MIP--INDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEW 58
           M+P  +   +E  + +     R   L+E   K+P  P     +   V  C +  ++  + 
Sbjct: 1   MVPPKLKQALELFKSLPK-ELRSQVLLEYAAKVPPPPPGV--ELERVHECQTPFFVHADV 57

Query: 59  ENKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQ 118
           E        + F+   ++  V     +++     +    +L++      +  GL E  + 
Sbjct: 58  E---GGKVRLYFHVPDEAPTVKAFAGLLREGLEGESPEAVLEVP-PGFYRGYGLEEFFTP 113

Query: 119 KRMNGLYTIVNKIQDLTQEYL 139
            R+ GL   + ++Q   ++ L
Sbjct: 114 LRLRGLEAALLRLQAQVRKAL 134


>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics,
           PSI, protein structure initiative, northeast structural
           genomics consortium, NESG; NMR {Escherichia coli}
           (A:1-45,A:86-155)
          Length = 115

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 29/136 (21%), Positives = 43/136 (31%), Gaps = 44/136 (32%)

Query: 7   IIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDP 66
           +      +    D+Y  LI LGK+LP                                  
Sbjct: 20  LRNTFAPLTQWEDKYRQLIMLGKQLP---------------------------------- 45

Query: 67  IMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYT 126
                     +IV GLL ++ +    K  +E+     L +   LGL   LS  R  GL  
Sbjct: 46  ----------RIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQGLNA 95

Query: 127 IVNKIQDLTQEYLNVH 142
           +   I   T++ L  H
Sbjct: 96  LSEAIIAATKQVLEHH 111


>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics,
          PSI, protein structure initiative, northeast structural
          genomics consortium, NESG; NMR {Escherichia coli}
          (A:46-85)
          Length = 40

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 34 FPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSD 75
           P E       +AGC +++W+         ++  M F+  S+
Sbjct: 2  LPDELKAQAKEIAGCENRVWLGYT----VAENGKMHFFGDSE 39


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 28.6 bits (63), Expect = 0.37
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 16/84 (19%)

Query: 77  QIVCG----LLY-IVKSIYAHKKISEILKMDSLTILQHLGLTE-------NLSQKRMNGL 124
           QIV G    ++  + +     + I   +  ++  +L   GL +        L +     L
Sbjct: 237 QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVL 296

Query: 125 Y--TIVNKIQDLTQEYLN--VHIK 144
           +  T   +++   + +      I+
Sbjct: 297 FSATFSERVEKYAERFAPNANEIR 320


>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain,
          YQGF domain, transcription, RNA binding protein; 2.27A
          {Pseudomonas aeruginosa} (A:1-99)
          Length = 99

 Score = 24.3 bits (53), Expect = 7.3
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 10 DMEMIEDLHDRYHYLIELGKK 30
          D   +  L +R  YL EL ++
Sbjct: 53 DDTQLRMLEERLRYLRELEER 73


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,092,322
Number of extensions: 44901
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 18
Length of query: 146
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 66
Effective length of database: 2,251,649
Effective search space: 148608834
Effective search space used: 148608834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.1 bits)