RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780998|ref|YP_003065411.1| hypothetical protein CLIBASIA_04495 [Candidatus Liberibacter asiaticus str. psy62] (146 letters) >d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia coli [TaxId: 562]} Length = 149 Score = 133 bits (336), Expect = 6e-33 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 4/138 (2%) Query: 2 IPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENK 61 + + + D+Y LI LGK+LP P E +AGC +++W+ Sbjct: 15 VTAETLRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTV--- 71 Query: 62 GDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRM 121 ++ M F+ S+ +IV GLL ++ + K +E+ L + LGL LS R Sbjct: 72 -AENGKMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRS 130 Query: 122 NGLYTIVNKIQDLTQEYL 139 GL + I T++ L Sbjct: 131 QGLNALSEAIIAATKQVL 148 >d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]} Length = 144 Score = 126 bits (318), Expect = 8e-31 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%) Query: 1 MIP-INDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWE 59 ++P ++ + + ++Y Y+IELG++LP E + QN + GC S++W+V+ Sbjct: 1 LLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSPQNSIQGCQSQVWIVMRQN 60 Query: 60 NKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQK 119 +G + SD+ IV GL+ +V +Y +I+ D + + LT++L+ Sbjct: 61 AQGI----IELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDVRPWFEKMALTQHLTPS 116 Query: 120 RMNGLYTIVNKIQDLTQEY 138 R GL ++ I+ Sbjct: 117 RSQGLEAMIRAIRAKAAAL 135 >d3b8la1 d.17.4.28 (A:1-144) Uncharacterized protein Saro3538 {Novosphingobium aromaticivorans [TaxId: 48935]} Length = 144 Score = 27.5 bits (60), Expect = 0.48 Identities = 8/40 (20%), Positives = 14/40 (35%) Query: 8 IEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAG 47 IED I+DL Y + ++ + + D Sbjct: 5 IEDRLAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLS 44 >d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human (Homo sapiens) [TaxId: 9606]} Length = 233 Score = 25.0 bits (54), Expect = 2.6 Identities = 21/147 (14%), Positives = 52/147 (35%), Gaps = 9/147 (6%) Query: 8 IEDMEMIEDLHDRY----HYLIELGKKLPLFPKEYMTDQNIV--AGCMSKLWMVIEWENK 61 ED ++ +D + + +K+P F + DQ+++ + + + + + +K Sbjct: 35 KEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSK 94 Query: 62 GDQDPIMIF--YAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQK 119 + ++ + Q G + SI A + L +D L ++ + Sbjct: 95 PGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDV-PAFACLSALVLITDR 153 Query: 120 RMNGLYTIVNKIQDLTQEYLNVHIKER 146 V ++Q+ L H+ Sbjct: 154 HGLQEPRRVEELQNRIASCLKEHVAAV 180 >d1a3aa_ d.112.1.1 (A:) Phosphotransferase IIa-mannitol {Escherichia coli [TaxId: 562]} Length = 145 Score = 24.9 bits (54), Expect = 2.8 Identities = 10/99 (10%), Positives = 30/99 (30%), Gaps = 4/99 (4%) Query: 6 DIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQD 65 + ++ M E L Y + +P E + + + + D Sbjct: 38 EYVQAMLDREKLTPTY---LGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDI 94 Query: 66 PIMIFY-AVSDSQIVCGLLYIVKSIYAHKKISEILKMDS 103 ++ A +++ + + + ++ I + S Sbjct: 95 ARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTS 133 >d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 412 Score = 24.7 bits (53), Expect = 3.8 Identities = 4/29 (13%), Positives = 9/29 (31%) Query: 11 MEMIEDLHDRYHYLIELGKKLPLFPKEYM 39 E + D + + +L +Y Sbjct: 64 AEQLADARIKEGFWAYAKDRLERAQGDYQ 92 >d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 167 Score = 24.4 bits (52), Expect = 4.8 Identities = 7/25 (28%), Positives = 13/25 (52%) Query: 1 MIPINDIIEDMEMIEDLHDRYHYLI 25 M P+++ ++ I+ L RY I Sbjct: 1 MGPVDEQWIEILRIQALCARYCLTI 25 >d1dmua_ c.52.1.4 (A:) Restriction endonuclease BglI {Bacillus subtilis [TaxId: 1423]} Length = 299 Score = 23.8 bits (51), Expect = 6.5 Identities = 8/26 (30%), Positives = 14/26 (53%) Query: 71 YAVSDSQIVCGLLYIVKSIYAHKKIS 96 Y +SD I + +K IYA + ++ Sbjct: 199 YILSDGTIAPVVHLFIKPIYAMRSLT 224 >d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type 2 [TaxId: 10515]} Length = 646 Score = 23.5 bits (51), Expect = 7.1 Identities = 3/11 (27%), Positives = 7/11 (63%) Query: 13 MIEDLHDRYHY 23 +++ + DR Y Sbjct: 380 LLDSIGDRTRY 390 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0470 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 550,443 Number of extensions: 23611 Number of successful extensions: 88 Number of sequences better than 10.0: 1 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 22 Length of query: 146 Length of database: 2,407,596 Length adjustment: 77 Effective length of query: 69 Effective length of database: 1,350,386 Effective search space: 93176634 Effective search space used: 93176634 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (23.3 bits)