BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780998|ref|YP_003065411.1| hypothetical protein
CLIBASIA_04495 [Candidatus Liberibacter asiaticus str. psy62]
         (146 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780998|ref|YP_003065411.1| hypothetical protein CLIBASIA_04495 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 146

 Score =  298 bits (763), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MIPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWEN 60
           MIPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWEN
Sbjct: 1   MIPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWEN 60

Query: 61  KGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKR 120
           KGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKR
Sbjct: 61  KGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKR 120

Query: 121 MNGLYTIVNKIQDLTQEYLNVHIKER 146
           MNGLYTIVNKIQDLTQEYLNVHIKER
Sbjct: 121 MNGLYTIVNKIQDLTQEYLNVHIKER 146


>gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 228

 Score = 23.5 bits (49), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 38  YMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYI--VKSIYAHKKI 95
           Y   QNI+A  ++K+   I+  N   ++P    Y ++    +   LYI   K I   +  
Sbjct: 5   YFPQQNIIAELVAKMLFEIKAVNFSPENP----YHLTSG--IVSPLYIDCRKLISFVRAR 58

Query: 96  SEILKMDSLTILQHLGL 112
           S I+ + + T+L+++G 
Sbjct: 59  SMIMDLTAKTVLRNIGF 75


>gi|254781128|ref|YP_003065541.1| hypothetical protein CLIBASIA_05150 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 225

 Score = 22.3 bits (46), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 48  CMSKLWMVIEWENKGD 63
           C  + W V +W  KGD
Sbjct: 201 CYDQPWDVSKWREKGD 216


>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1040

 Score = 21.9 bits (45), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 75   DSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDL 134
            D + V  L YI        ++ +  K+D +T  +     + LS+K +  L  IV  +Q+ 
Sbjct: 953  DCRKVANLFYI--------RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004

Query: 135  TQEYLN 140
             Q +++
Sbjct: 1005 EQPFIS 1010


>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 702

 Score = 21.9 bits (45), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 2   IPINDIIEDMEMIEDLHDR 20
           IP++  IED  +I   HDR
Sbjct: 523 IPLSQFIEDQNLILFFHDR 541


>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 246

 Score = 21.2 bits (43), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 84  YIVKSIYAHKKISEIL--KMDSLTILQHLGLTENLS 117
           YIV+ +      +E L  KMD+L + + +G+T +L+
Sbjct: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,544
Number of Sequences: 1233
Number of extensions: 3881
Number of successful extensions: 10
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 146
length of database: 328,796
effective HSP length: 66
effective length of query: 80
effective length of database: 247,418
effective search space: 19793440
effective search space used: 19793440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 34 (17.7 bits)