HHsearch alignment for GI: 254780999 and conserved domain: PRK00768
>PRK00768 nadE NAD synthetase; Reviewed.
Probab=100.00 E-value=0 Score=472.46 Aligned_cols=235 Identities=26% Similarity=0.350 Sum_probs=206.0
Q ss_pred HHHHCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCC---CHH------HEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 86422020358887642245405752158723689999998414---954------467973246666522135699999
Q gi|254780999|r 273 EADYNACVLSLRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDAL---GKE------NVQTIMLPYKYTSPQSLEDAAACA 343 (562)
Q Consensus 273 e~~~~Alvlgl~d~~~~~g~~~~viglSGGiDSal~a~la~~al---g~~------~v~~~~mp~~~~s~~s~~~a~~la 343 (562)
T Consensus 21 ~~~i~~iv~~Lrdyv~k~g~~g~VlGLSGGIDSAvta~L~~~Av~al~~~~~~~~~~~iav~mP--~~~~~~~~da~~~~ 98 (274)
T PRK00768 21 EEEIRRRVDFLKDYLKKSGLKTLVLGISGGQDSTLAGRLAQLAVEELRAETGDASYQFIAVRLP--YGVQADEDDAQDAL 98 (274)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCCCCCHHHHHHHH
T ss_conf 9999999999999999849983998188576889999999999998653047664226897689--88657999999998
Q ss_pred HHHCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCCC
Q ss_conf 972135-4267758999998863132346874310110123304667798887516954436432447754110236665
Q gi|254780999|r 344 KALGCK-YDVLPIHDLVNHFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYGDM 422 (562)
Q Consensus 344 ~~lg~~-~~~i~I~~~~~~~~~~~~~~~~~~~~~~~~eN~qaR~R~~~L~~~an~~~~lvl~t~nksE~~~Gy~T~~GD~ 422 (562)
T Consensus 99 ~~i~~~~~~~i~I~~~~d~~~~~l~~~~-~~~~d~~~~NiqaRiRM~~LY~~An~~g~LVlGTgNksE~~vGYfTkYGDg 177 (274)
T PRK00768 99 AFIQPDEVLTVNIKPAVDASVAALRAAG-IELSDFVKGNIKARERMIAQYAIAGARGGLVVGTDHAAEAITGFFTKFGDG 177 (274)
T ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCEEEECCC
T ss_conf 5227660488617099999999998727-751167888857989999999998278998864886404440850102677
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCC---CCCCCCCCCC-CHHHHHHHHHHHHH
Q ss_conf 5540101776336589999996310332223444466887882889884538---9997700068-87889999999982
Q gi|254780999|r 423 SGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELR---PHQTDQESLP-PYPILDDIIKRIVE 498 (562)
Q Consensus 423 ~g~~~p~~~l~Kt~v~~la~~~n~~~~~~~~~~~~~~ip~~i~~~~psaeL~---~~Q~ded~l~-~Y~~lD~il~~~i~ 498 (562)
T Consensus 178 ~~Di~PI~dL~KteV~~lA~~Lg--------------vP~~Ii~k~PSA~Lwe~~pgQtDE~elG~~Y~~lD~~L~---- 239 (274)
T PRK00768 178 GADLLPLFGLNKRQGRALLAALG--------------APEHLYEKVPTADLEDDRPGLPDEVALGVTYDQIDDYLE---- 239 (274)
T ss_pred CCCHHHHCCCCHHHHHHHHHHHC--------------CCHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHC----
T ss_conf 51737632561999999999959--------------799983689899754458999777775949999999983----
Q ss_pred CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 799977987189999999999999874566873897024
Q gi|254780999|r 499 NEESFINNDQEYNDETVRYVEHLLYGSEYKRRQAPVGTK 537 (562)
Q Consensus 499 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~KR~~~pp~~~ 537 (562)
T Consensus 240 --------g~~~~~~~~~~i~~~~~~s~hKR-~~P~~~~ 269 (274)
T PRK00768 240 --------GKPVSEEAAETIENWYLKTQHKR-HLPITIF 269 (274)
T ss_pred --------CCCCCHHHHHHHHHHHHCCCCCC-CCCCCCC
T ss_conf --------89999999999999997254565-7989964