HHsearch alignment for GI: 254780999 and conserved domain: PRK13825
>PRK13825 conjugal transfer protein TraB; Provisional.
Probab=98.61 E-value=5.2e-06 Score=58.48 Aligned_cols=160 Identities=14% Similarity=0.175 Sum_probs=95.4
Q ss_pred HHHHHCCCCEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEECC-EEE
Q ss_conf 9999859989991664447998445414889999999999999999887697899999998889878999999699-799
Q gi|254780999|r 31 EEANRQGMDLILFTELFISGYPPEDLVFKKSFIQACSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAG-NII 109 (562)
Q Consensus 31 ~~A~~~gadLvvfPEl~LtGY~~~Dl~~~~~f~~~~~~~l~~La~~~~~~~i~iivG~p~~~~~~~yNsa~vi~~G-~il 109 (562)
T Consensus 217 ~~~~~~g~~vvvLPEs~lg~Wtp~--------~~~lw~~------~l~~~~~tvi~Ga~v~~~~Gydn~lv~i~~~~~ri 282 (389)
T PRK13825 217 RAAARAGARVVVLPESALGFWTPT--------TERLWRE------SLRGADATVIAGAAVVDPGGYDNVLVAISAGGGRI 282 (389)
T ss_pred HHHCCCCCEEEEECCHHCCCCCCH--------HHHHHHH------HHCCCCCEEEEEEEECCCCCCCCEEEEECCCCCEE
T ss_conf 873479973999463211568713--------8999999------74689928998236758998744479971897268
Q ss_pred EEEEEEEECCC------CCCCCCCCCCC-CCCCCEEEECCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 98877762355------43332100377-888761476474562011111110168999997147775993155533358
Q gi|254780999|r 110 AVRDKINLPNY------SEFHEKRTFIS-GYSNDPIVFRDIRLGILICEDIWKNSNICKHLKKQGAEFLFSLNASPYYHN 182 (562)
Q Consensus 110 ~~y~K~~LP~y------~~FdE~r~F~~-G~~~~~~~~~g~kiGv~ICeDlw~~~~~~~~la~~Gadlii~psASp~~~~ 182 (562)
T Consensus 283 ly~~RmPVP~sMWqPW~~~~g~~g~~~a~~f~npv~~i~G~r~a~lICYEqll~w-p~l~sml~~Pdviva~~N~Wwt~g 361 (389)
T PRK13825 283 LYRERMPVPVSMWQPWLPWTGESGGARAHFFANPVVTVDGRRVAPLICYEQLIVW-PVLQSMLHAPDVIVAVGNGWWTKG 361 (389)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEEEHHHHHHH-HHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 5036776651036677522489997200124586364568068775418787888-999987429988997588661689
Q ss_pred CHHHH--HHHHHHHHHHCCCEEEEC
Q ss_conf 07888--788999854337046421
Q gi|254780999|r 183 KLKKR--HEIVTGQISHVHLPIIYV 205 (562)
Q Consensus 183 k~~~R--~~~~~~~a~e~~~~vvy~ 205 (562)
T Consensus 362 Tsi~aIQras~~awarLfg~Plv~A 386 (389)
T PRK13825 362 TSIVAIQRASAEAWARLFGVPLVRA 386 (389)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9709999999999999837844876