HHsearch alignment for GI: 254780999 and conserved domain: TIGR00342
>TIGR00342 TIGR00342 thiamine biosynthesis/tRNA modification protein ThiI; InterPro: IPR003720 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway . Almost all the proteins in this group have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0009228 thiamin biosynthetic process.
Probab=96.11 E-value=0.044 Score=32.80 Aligned_cols=140 Identities=21% Similarity=0.241 Sum_probs=84.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCHHHEEEEECC-CCCCCCCCHHHHHHHHHHH-------CCCCCCCCHHHHHHHHHH
Q ss_conf 40575215872368999999841495446797324-6666522135699999972-------135426775899999886
Q gi|254780999|r 293 HKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLP-YKYTSPQSLEDAAACAKAL-------GCKYDVLPIHDLVNHFFS 364 (562)
Q Consensus 293 ~~~viglSGGiDSal~a~la~~alg~~~v~~~~mp-~~~~s~~s~~~a~~la~~l-------g~~~~~i~I~~~~~~~~~ 364 (562)
T Consensus 187 Gkvl~LlSGGiDSPVAaf~~m~R-G-c~V~~vhf~~~~~~~~~~~~kv~~la~~~~~~~~~~~~~l~~~~F~~~~~~~~~ 264 (391)
T TIGR00342 187 GKVLALLSGGIDSPVAAFLAMKR-G-CRVVAVHFFNEPAASEKAREKVERLANLLSLNETGGSVKLYVVDFTDVQEEIIE 264 (391)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHC-C-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHH
T ss_conf 36320411883516799999663-8-779999732885524689999999999885400037999998543899999984
Q ss_pred HHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCHHHHHHH----------HCCCCCCCCCCCC-CCCCCC
Q ss_conf 31323468743101101233046677988875169544364324477541----------1023666555401-017763
Q gi|254780999|r 365 LMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVG----------YGTLYGDMSGGFN-PLKDLY 433 (562)
Q Consensus 365 ~~~~~~~~~~~~~~~eN~qaR~R~~~L~~~an~~~~lvl~t~nksE~~~G----------y~T~~GD~~g~~~-p~~~l~ 433 (562)
T Consensus 265 ~~~e~----~~~v~~----rR~M~~~A~~~ae~~g~~A~VTGe----~LGQVASQTL~Nl~vI~~~~~~~iL~RPLIg~D 332 (391)
T TIGR00342 265 IIPEK----YTMVLC----RRLMLKIASKVAEKEGCLAIVTGE----SLGQVASQTLENLRVIQAVVNTPILRRPLIGMD 332 (391)
T ss_pred CCCCC----CEEEEH----HHHHHHHHHHHHHHCCCCEEEECC----CCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf 18998----788740----667999999888860994899766----342037778889999972378742407755479
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 3658999999631
Q gi|254780999|r 434 KTQVFQLASWRNS 446 (562)
Q Consensus 434 Kt~v~~la~~~n~ 446 (562)
T Consensus 333 K~~Ii~~Ak~IgT 345 (391)
T TIGR00342 333 KEEIIELAKEIGT 345 (391)
T ss_pred HHHHHHHHHHCCC
T ss_conf 7899999741396