HHsearch alignment for GI: 254780999 and conserved domain: TIGR00342

>TIGR00342 TIGR00342 thiamine biosynthesis/tRNA modification protein ThiI; InterPro: IPR003720 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway . Almost all the proteins in this group have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0009228 thiamin biosynthetic process.
Probab=96.11  E-value=0.044  Score=32.80  Aligned_cols=140  Identities=21%  Similarity=0.241  Sum_probs=84.8

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCHHHEEEEECC-CCCCCCCCHHHHHHHHHHH-------CCCCCCCCHHHHHHHHHH
Q ss_conf             40575215872368999999841495446797324-6666522135699999972-------135426775899999886
Q gi|254780999|r  293 HKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLP-YKYTSPQSLEDAAACAKAL-------GCKYDVLPIHDLVNHFFS  364 (562)
Q Consensus       293 ~~~viglSGGiDSal~a~la~~alg~~~v~~~~mp-~~~~s~~s~~~a~~la~~l-------g~~~~~i~I~~~~~~~~~  364 (562)
T Consensus       187 Gkvl~LlSGGiDSPVAaf~~m~R-G-c~V~~vhf~~~~~~~~~~~~kv~~la~~~~~~~~~~~~~l~~~~F~~~~~~~~~  264 (391)
T TIGR00342       187 GKVLALLSGGIDSPVAAFLAMKR-G-CRVVAVHFFNEPAASEKAREKVERLANLLSLNETGGSVKLYVVDFTDVQEEIIE  264 (391)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHC-C-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHH
T ss_conf             36320411883516799999663-8-779999732885524689999999999885400037999998543899999984


Q ss_pred             HHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCHHHHHHH----------HCCCCCCCCCCCC-CCCCCC
Q ss_conf             31323468743101101233046677988875169544364324477541----------1023666555401-017763
Q gi|254780999|r  365 LMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVG----------YGTLYGDMSGGFN-PLKDLY  433 (562)
Q Consensus       365 ~~~~~~~~~~~~~~~eN~qaR~R~~~L~~~an~~~~lvl~t~nksE~~~G----------y~T~~GD~~g~~~-p~~~l~  433 (562)
T Consensus       265 ~~~e~----~~~v~~----rR~M~~~A~~~ae~~g~~A~VTGe----~LGQVASQTL~Nl~vI~~~~~~~iL~RPLIg~D  332 (391)
T TIGR00342       265 IIPEK----YTMVLC----RRLMLKIASKVAEKEGCLAIVTGE----SLGQVASQTLENLRVIQAVVNTPILRRPLIGMD  332 (391)
T ss_pred             CCCCC----CEEEEH----HHHHHHHHHHHHHHCCCCEEEECC----CCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf             18998----788740----667999999888860994899766----342037778889999972378742407755479


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             3658999999631
Q gi|254780999|r  434 KTQVFQLASWRNS  446 (562)
Q Consensus       434 Kt~v~~la~~~n~  446 (562)
T Consensus       333 K~~Ii~~Ak~IgT  345 (391)
T TIGR00342       333 KEEIIELAKEIGT  345 (391)
T ss_pred             HHHHHHHHHHCCC
T ss_conf             7899999741396