HHsearch alignment for GI: 254780999 and conserved domain: TIGR00546
>TIGR00546 lnt apolipoprotein N-acyltransferase; InterPro: IPR004563 Apolipoprotein N-acyltransferase 2.3.1 from EC transfers the acyl group to lipoproteins and is involved in lipoprotein biosynthesis. It is an integral membrane protein.; GO: 0016410 N-acyltransferase activity, 0042158 lipoprotein biosynthetic process, 0016021 integral to membrane.
Probab=99.90 E-value=1.3e-22 Score=167.21 Aligned_cols=214 Identities=21% Similarity=0.318 Sum_probs=162.0
Q ss_pred CCCEEEEEEECCCCCC------CHHHHHHHHHHHHHHHHHC-------CCCEEEECCCCCCCCCHHHHHCCHHHHHH---
Q ss_conf 8862899996388368------8999999999999999985-------99899916644479984454148899999---
Q gi|254780999|r 2 LKKLKIAIAQLNPVVG------DIAGNIAKARRAREEANRQ-------GMDLILFTELFISGYPPEDLVFKKSFIQA--- 65 (562)
Q Consensus 2 ~~~mkIal~Q~n~~~g------d~~~N~~~i~~~i~~A~~~-------gadLvvfPEl~LtGY~~~Dl~~~~~f~~~--- 65 (562)
T Consensus 177 ~~~~~ValvQ~~~p~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvvwPEta~~~~l-~---~~~~~~~~~Q~ 252 (441)
T TIGR00546 177 EPTLKVALVQPNIPQDLKFDKEGLEAILELLTSLTKQAVEKVHAGLYEKPDLVVWPETALPFDL-E---NSPDKLHESQS 252 (441)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHCCCC-C---CCCHHCCCCCC
T ss_conf 7326899986888800134110179999999999885225667677787327884615332366-6---43211033673
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEECC-------EEEEEEEEEEC-C----EEEEEEEEEEE-------C--CCCCC-
Q ss_conf 99999999999887697899999998889-------87899999969-9----79998877762-------3--55433-
Q gi|254780999|r 66 CSSAIDTLKSDTHDGGAGIVVGFPRQDQE-------GVLNSVVILDA-G----NIIAVRDKINL-------P--NYSEF- 123 (562)
Q Consensus 66 ~~~~l~~La~~~~~~~i~iivG~p~~~~~-------~~yNsa~vi~~-G----~il~~y~K~~L-------P--~y~~F- 123 (562)
T Consensus 253 ~f~~~~~~~~~~~~~~~p~~~G~~~~~~~~~~~~~~~~yNs~~~~~~~~~a~~~~~~~Y~K~~LVPFGEy~P~~~~~~f~ 332 (441)
T TIGR00546 253 AFDLLKALKALVLSKGIPILIGAPDADPKGQKGEEYEYYNSVYLLDPGGKAVLEVVQRYDKVKLVPFGEYIPFGLKFVFK 332 (441)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCEEECCCCCCCCCCCHHHHH
T ss_conf 78999999999874098489963010378888874311125899848862003505353874543562326776333444
Q ss_pred ---------CCCCCCCCCCCCCEEEECC--EEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCC--CHHHHHHH
Q ss_conf ---------3210037788876147647--4562011111110168999997147775993155533358--07888788
Q gi|254780999|r 124 ---------HEKRTFISGYSNDPIVFRD--IRLGILICEDIWKNSNICKHLKKQGAEFLFSLNASPYYHN--KLKKRHEI 190 (562)
Q Consensus 124 ---------dE~r~F~~G~~~~~~~~~g--~kiGv~ICeDlw~~~~~~~~la~~Gadlii~psASp~~~~--k~~~R~~~ 190 (562)
T Consensus 333 ~~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~ICYE~~Fp~-~~r~~~~~Ga~~L~~~tNDaWf~~~~~~~QH~~~ 411 (441)
T TIGR00546 333 WLSKLFFLASEQESFARGNGPQVLKLPGGAVKLAPLICYESIFPE-LVRALARQGAELLVNLTNDAWFGDSSGPWQHFAL 411 (441)
T ss_pred HHHHHHHHCCCCCCHHCCCCCCCCCCCCCCEEEEEEEEHHHHHHH-HHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 776543200222331127887653447760277753115541168-8987425883289974005643666167889999
Q ss_pred HHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEECCCCEE
Q ss_conf 999854337046421356887662104864355589859
Q gi|254780999|r 191 VTGQISHVHLPIIYVNQVGGQDELIFDGASFCFDGQQQL 229 (562)
Q Consensus 191 ~~~~a~e~~~~vvy~N~vGg~d~lvf~G~S~I~d~~G~i 229 (562)
T Consensus 412 ~~~RA~E~~~~~~Ra~Nt---------G~sa~i~p~G~~ 441 (441)
T TIGR00546 412 ARFRAIENGRPLVRAANT---------GISAVIDPRGRI 441 (441)
T ss_pred HHHHHHHCCCEEEEEECC---------CCEEEEECCCCC
T ss_conf 888876448548999606---------625898067889