HHsearch alignment for GI: 254780999 and conserved domain: TIGR00552

>TIGR00552 nadE NAD+ synthetase; InterPro: IPR003694 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology .; GO: 0003952 NAD+ synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0009435 NAD biosynthetic process.
Probab=100.00  E-value=0  Score=354.97  Aligned_cols=262  Identities=35%  Similarity=0.485  Sum_probs=226.4

Q ss_pred             HHHHHHCCHHHHHHHHHHHC-CCCEEEEECCCCCHH--------HHHHHHHHHCCCHHHEEEEECCCCCC-CCCCHHHHH
Q ss_conf             88864220203588876422-454057521587236--------89999998414954467973246666-522135699
Q gi|254780999|r  271 EEEADYNACVLSLRDYVQKN-NFHKVIIGLSGGIDS--------ALCAAIAVDALGKENVQTIMLPYKYT-SPQSLEDAA  340 (562)
Q Consensus       271 ~~e~~~~Alvlgl~d~~~~~-g~~~~viglSGGiDS--------al~a~la~~alg~~~v~~~~mp~~~~-s~~s~~~a~  340 (562)
T Consensus         5 ~~~~~~~~~~-~~~~~~~~~~~~~g~v~GlsGG~ds~l~g~l~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~a~   83 (286)
T TIGR00552         5 VVEELEDAVD-FLRGYVKKSPGAKGVVLGLSGGVDSTLAGKLCQAVVAALCVEALGKEQNHALLLPHSNTTPEDDVQDAL   83 (286)
T ss_pred             HHHHHHHHHH-HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCCHHHHHHHH
T ss_conf             7899999898-888887632576504673047620356778999999999985046114203321466788412179999


Q ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCC
Q ss_conf             99997213542677589999988631323468743101101233046677988875169544364324477541102366
Q gi|254780999|r  341 ACAKALGCKYDVLPIHDLVNHFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYG  420 (562)
Q Consensus       341 ~la~~lg~~~~~i~I~~~~~~~~~~~~~~~~~~~~~~~~eN~qaR~R~~~L~~~an~~~~lvl~t~nksE~~~Gy~T~~G  420 (562)
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gn~~~r~r~~~~y~~a~~~~~lv~gt~n~~e~~~Gy~t~~G  162 (286)
T TIGR00552        84 ALAEPLGINYKTIDIAPIAASFQAQTET-GDPLADFLAEGNLKARLRMALLYAHANKHNLLVLGTGNKSELLLGYFTKYG  162 (286)
T ss_pred             HHHHHCCCCCEECCCHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCC
T ss_conf             9887405442111304677887764203-443331023322247889999988731016356404613445432001014


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC---CCCCCCCC-CHHHHHHHHHHH
Q ss_conf             65554010177633658999999631033222344446688788288988453899---97700068-878899999999
Q gi|254780999|r  421 DMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPH---QTDQESLP-PYPILDDIIKRI  496 (562)
Q Consensus       421 D~~g~~~p~~~l~Kt~v~~la~~~n~~~~~~~~~~~~~~ip~~i~~~~psaeL~~~---Q~ded~l~-~Y~~lD~il~~~  496 (562)
T Consensus       163 dg~~d~~p~~~l~k~~~~~l~~~l~~~---------~~~~P~~~~~k~P~a~l~~g~p~q~de~~~g~~y~~ld~~l~~~  233 (286)
T TIGR00552       163 DGGCDILPLGGLFKTEVYELAKRLGVE---------QTIIPEEIIEKPPTADLWPGKPSQTDETELGIPYDELDDYLKGL  233 (286)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHH
T ss_conf             420003455322378899999981753---------10146667337887554678887765445057777777887766


Q ss_pred             HHCCCCH---HHH-HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCC
Q ss_conf             8279997---798-71899999999999998745668738970247264537
Q gi|254780999|r  497 VENEESF---INN-DQEYNDETVRYVEHLLYGSEYKRRQAPVGTKITAKSFG  544 (562)
Q Consensus       497 i~~~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~KR~~~pp~~~is~~sfg  544 (562)
T Consensus       234 ~~~~~~~p~d~~~~~~~~~-~~~~~~~~~~~~~~hk~~~~~P~~~~~~~~~~  284 (286)
T TIGR00552       234 EELSQPKPIDQEVLATLLP-ELVKRIESLVQKSEHKREQALPPVPTIFDLFW  284 (286)
T ss_pred             HHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
T ss_conf             6412677514687862016-89999999887555555423786113545305