HHsearch alignment for GI: 254780999 and conserved domain: TIGR03104
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=98.35 E-value=4.9e-06 Score=58.70 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=75.4
Q ss_pred HCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHEEEEECCCCCC---CCCCHHHHHHHHHHHCCCCCC
Q ss_conf 22020358887642245405752158723689999998414954467973246666---522135699999972135426
Q gi|254780999|r 276 YNACVLSLRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYT---SPQSLEDAAACAKALGCKYDV 352 (562)
Q Consensus 276 ~~Alvlgl~d~~~~~g~~~~viglSGGiDSal~a~la~~alg~~~v~~~~mp~~~~---s~~s~~~a~~la~~lg~~~~~ 352 (562)
T Consensus 246 ~~~l~~sV~~rl~s--Dvpvg~~LSGGlDSS~i~a~~~~~~-~~~i~tfs~~f~~~~~~~~dE~~~a~~va~~~~~~h~~ 322 (589)
T TIGR03104 246 LEALRLAVKRRLVA--DVPVGVLLSGGLDSSLIVGLLAEAG-VDGLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHK 322 (589)
T ss_pred HHHHHHHHHHHHHC--CCCCCEECCCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 99999999999744--6763000178754389999999956-99985278872468877666799999999973878579
Q ss_pred CCHH--HHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCC
Q ss_conf 7758--9999988631323468743101101233046677988875169544364324477541102
Q gi|254780999|r 353 LPIH--DLVNHFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGT 417 (562)
Q Consensus 353 i~I~--~~~~~~~~~~~~~~~~~~~~~~~eN~qaR~R~~~L~~~an~~~~lvl~t~nksE~~~Gy~T 417 (562)
T Consensus 323 ~~~~~~~~~~~l~~~~~~-~deP~~~~------~~~~~~~l~~~~~~~~kV~LsG~GaDElfgGY~~ 382 (589)
T TIGR03104 323 IRIPNHRVLPALPEAVAA-MSEPMVSH------DCVAFYLLSEEVSKHVKVVQSGQGADEVFGGYHW 382 (589)
T ss_pred EEECCHHHHHHHHHHHHC-CCCCCCCC------HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
T ss_conf 995717899988998852-68987683------0688999998732883699952033323479754