HHsearch alignment for GI: 254780999 and conserved domain: TIGR03381
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=0 Score=377.25 Aligned_cols=246 Identities=26% Similarity=0.387 Sum_probs=214.3
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHCCHHHHHHHH-----HHHHHHHHHHHH
Q ss_conf 289999638836889999999999999999859989991664447998445414889999999-----999999999887
Q gi|254780999|r 5 LKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKKSFIQACS-----SAIDTLKSDTHD 79 (562)
Q Consensus 5 mkIal~Q~n~~~gd~~~N~~~i~~~i~~A~~~gadLvvfPEl~LtGY~~~Dl~~~~~f~~~~~-----~~l~~La~~~~~ 79 (562)
T Consensus 1 mkvA~vQ~~~~-~d~~~Nl~~~~~~i~~A~~~ga~livfPEl~~tgy~~~~~--~~~~~~~a~~~~~~~~~~~l~~~A~~ 77 (279)
T TIGR03381 1 VTVAALQMACS-DDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQ--DEDYFALAQPVEGHPAIKRFQALAKE 77 (279)
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC--CHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 98999945489-9999999999999999998849899938876677754455--44478740325798999999999987
Q ss_pred CCCEEEEEEEEEECCEEEEEEEEEE-CCEEEEEEEEEEECCCCCCCCCCCCCCCCC-CCEEEECCEEEEECCCCCCCHHH
Q ss_conf 6978999999988898789999996-997999887776235543332100377888-76147647456201111111016
Q gi|254780999|r 80 GGAGIVVGFPRQDQEGVLNSVVILD-AGNIIAVRDKINLPNYSEFHEKRTFISGYS-NDPIVFRDIRLGILICEDIWKNS 157 (562)
Q Consensus 80 ~~i~iivG~p~~~~~~~yNsa~vi~-~G~il~~y~K~~LP~y~~FdE~r~F~~G~~-~~~~~~~g~kiGv~ICeDlw~~~ 157 (562)
T Consensus 78 ~~i~i~~g~~e~~~~~~yNt~~vi~~~G~i~~~yrK~hlp~~~~~~E~~~f~~G~~~~~v~~~~~~kiG~~ICyD~~fPe 157 (279)
T TIGR03381 78 LGVVIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQWFPE 157 (279)
T ss_pred CCEEEEEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCEEEECCCEEEEEEEECCCCCH
T ss_conf 39599994478608823788999989980999998853899996347875148887661598589369876660435748
Q ss_pred HHHHHHHHCCCCEEEECCCC---CCCC--CCHHHHHHHHHHHHHHCCCEEEECCCCCCC----CCCCCCCCCEEECCCCE
Q ss_conf 89999971477759931555---3335--807888788999854337046421356887----66210486435558985
Q gi|254780999|r 158 NICKHLKKQGAEFLFSLNAS---PYYH--NKLKKRHEIVTGQISHVHLPIIYVNQVGGQ----DELIFDGASFCFDGQQQ 228 (562)
Q Consensus 158 ~~~~~la~~Gadlii~psAS---p~~~--~k~~~R~~~~~~~a~e~~~~vvy~N~vGg~----d~lvf~G~S~I~d~~G~ 228 (562)
T Consensus 158 -~~r~la~~Ga~ii~~Psa~~~~p~~~~~~~~~~w~~~~~arA~en~~~vv~an~~G~~~~~~~~~~f~G~S~Iv~P~G~ 236 (279)
T TIGR03381 158 -TARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEIGDGGEQTFYGSSFIADHTGE 236 (279)
T ss_pred -HHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf -9999998699799988414687776556628999999999999829536510310035788887658498389999999
Q ss_pred EEEECCCCCCCEEEEEEEECCCCCCC
Q ss_conf 99961677763799999833521236
Q gi|254780999|r 229 LAFQMKHFSEQNFMTEWHYDQQLSQW 254 (562)
Q Consensus 229 ii~~~~~f~e~~~i~d~d~d~~~~~~ 254 (562)
T Consensus 237 ila~~~~~~e~~i~a~iDl~~i~~~R 262 (279)
T TIGR03381 237 LVAEAGRSEEAVLVATFDLDEIAKQR 262 (279)
T ss_pred EEEECCCCCCEEEEEEEEHHHHHHHH
T ss_conf 98766899878999997599999999