HHsearch alignment for GI: 254780999 and conserved domain: cd07576
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=0 Score=391.55 Aligned_cols=240 Identities=25% Similarity=0.379 Sum_probs=214.9
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 89999638836889999999999999999859989991664447998445414889999999999999999887697899
Q gi|254780999|r 6 KIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKKSFIQACSSAIDTLKSDTHDGGAGIV 85 (562)
Q Consensus 6 kIal~Q~n~~~gd~~~N~~~i~~~i~~A~~~gadLvvfPEl~LtGY~~~Dl~~~~~f~~~~~~~l~~La~~~~~~~i~ii 85 (562)
T Consensus 1 kiA~~Q~~~~~gD~~~N~~~~~~~i~~A~~~ga~lvvfPE~~l~Gy~~~~~~~~~a~-~~~~~~~~~l~~~A~~~~i~iv 79 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLAE-PADGPALQALRAIARRHGIAIV 79 (254)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHC-CCCCHHHHHHHHHHHHCCCEEE
T ss_conf 999998999889999999999999999998869799948886358986612344311-4786999999999997298699
Q ss_pred EEEEEEECCEEEEEEEEEE-CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 9999988898789999996-997999887776235543332100377888761476474562011111110168999997
Q gi|254780999|r 86 VGFPRQDQEGVLNSVVILD-AGNIIAVRDKINLPNYSEFHEKRTFISGYSNDPIVFRDIRLGILICEDIWKNSNICKHLK 164 (562)
Q Consensus 86 vG~p~~~~~~~yNsa~vi~-~G~il~~y~K~~LP~y~~FdE~r~F~~G~~~~~~~~~g~kiGv~ICeDlw~~~~~~~~la 164 (562)
T Consensus 80 ~G~~e~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~---~E~~~f~~G~~~~vf~~~~~~iG~~IC~D~~fpe-~~r~la 155 (254)
T cd07576 80 VGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFGD---SERAAFTPGDRFPVVELRGLRVGLLICYDVEFPE-LVRALA 155 (254)
T ss_pred EEEEEEECCEEEEEEEEECCCCEEEEEECCCCCCCC---CCCEEECCCCCCEEEEECCEEEEEEEECCCCCCH-HHHHHH
T ss_conf 989997599788999999289839885714446886---6305883898634668898799988861543879-999999
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCEEEEE
Q ss_conf 14777599315553335807888788999854337046421356887662104864355589859996167776379999
Q gi|254780999|r 165 KQGAEFLFSLNASPYYHNKLKKRHEIVTGQISHVHLPIIYVNQVGGQDELIFDGASFCFDGQQQLAFQMKHFSEQNFMTE 244 (562)
Q Consensus 165 ~~Gadlii~psASp~~~~k~~~R~~~~~~~a~e~~~~vvy~N~vGg~d~lvf~G~S~I~d~~G~ii~~~~~f~e~~~i~d 244 (562)
T Consensus 156 ~~Ga~ii~~psa~~~~~~~~--~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~P~G~ila~~~~-~e~~~~ad 232 (254)
T cd07576 156 LAGADLVLVPTALMEPYGFV--ARTLVPARAFENQIFVAYANRCGAEDGLTYVGLSSIAGPDGTVLARAGR-GEALLVAD 232 (254)
T ss_pred HCCCCEEEECCCCCCCHHHH--HHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCEEEEECCCEEEEECCC-CCEEEEEE
T ss_conf 86997999887888852069--9999999999829949999664158980772876999189829876699-88699999
Q ss_pred EEECCCCCC
Q ss_conf 983352123
Q gi|254780999|r 245 WHYDQQLSQ 253 (562)
Q Consensus 245 ~d~d~~~~~ 253 (562)
T Consensus 233 iD~~~i~~~ 241 (254)
T cd07576 233 LDPAALAAA 241 (254)
T ss_pred ECHHHHHHH
T ss_conf 719999999