HHsearch alignment for GI: 254780999 and conserved domain: pfam02540

>pfam02540 NAD_synthase NAD synthase. NAD synthase (EC:6.3.5.1) is involved in the de novo synthesis of NAD and is induced by stress factors such as heat shock and glucose limitation.
Probab=100.00  E-value=0  Score=526.06  Aligned_cols=238  Identities=43%  Similarity=0.610  Sum_probs=228.3

Q ss_pred             CCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             20203588876422454057521587236899999984149544679732466665221356999999721354267758
Q gi|254780999|r  277 NACVLSLRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPIH  356 (562)
Q Consensus       277 ~Alvlgl~d~~~~~g~~~~viglSGGiDSal~a~la~~alg~~~v~~~~mp~~~~s~~s~~~a~~la~~lg~~~~~i~I~  356 (562)
T Consensus         3 ~~i~~~l~dyv~k~g~~gvViGlSGGIDSav~a~La~~AlG~~~v~~v~mP~~~ss~~s~~~A~~la~~lgi~~~~i~I~   82 (243)
T pfam02540         3 ERLVDFLRDYVQKSGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALIMPSINSSEEDVQDALALAENLGINYKTIDIK   82 (243)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECH
T ss_conf             79999999999981999199978887999999999999559742899964777898889999999999968926999888


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             99999886313234687431011012330466779888751695443643244775411023666555401017763365
Q gi|254780999|r  357 DLVNHFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYGDMSGGFNPLKDLYKTQ  436 (562)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~eN~qaR~R~~~L~~~an~~~~lvl~t~nksE~~~Gy~T~~GD~~g~~~p~~~l~Kt~  436 (562)
T Consensus        83 ~~~~~~~~~~~~----~~~~~a~~Ni~aR~Rm~~ly~~A~~~~~lVlgT~NksE~~~Gy~TkyGD~~~di~Pi~dL~Kte  158 (243)
T pfam02540        83 PIVRAFSQLFQP----AKDDLAKGNLKARIRMIILYAHANKFNRLVLGTGNKSELALGYFTKYGDGACDIAPIGDLYKTQ  158 (243)
T ss_pred             HHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCCCHHHHCCCCHHH
T ss_conf             999999988532----0137787455788889999986233791898168704200543231277765515416881899


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCHHHHHH--CCCHH
Q ss_conf             899999963103322234444668878828898845389997700068-878899999999827999779871--89999
Q gi|254780999|r  437 VFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPHQTDQESLP-PYPILDDIIKRIVENEESFINNDQ--EYNDE  513 (562)
Q Consensus       437 v~~la~~~n~~~~~~~~~~~~~~ip~~i~~~~psaeL~~~Q~ded~l~-~Y~~lD~il~~~i~~~~~~~~~~~--~~~~~  513 (562)
T Consensus       159 V~~la~~l~--------------vP~~ii~k~Psa~L~~~qtDE~~lg~~Y~~lD~~l~~~~~~~~~~~~i~~~~g~~~~  224 (243)
T pfam02540       159 VYELAKRLN--------------VPERIIKKPPSADLWPGQTDEDELGITYDELDQILKGLIEKKLSPEEIIGDLGLPAE  224 (243)
T ss_pred             HHHHHHHHC--------------CCHHHHHCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHH
T ss_conf             999999949--------------888898379998888899861003899999999999998759999999987298999


Q ss_pred             HHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999987456687389
Q gi|254780999|r  514 TVRYVEHLLYGSEYKRRQAP  533 (562)
Q Consensus       514 ~v~~~~~~~~~~~~KR~~~p  533 (562)
T Consensus       225 ~v~~i~~~~~~~e~KR~-~P  243 (243)
T pfam02540       225 VVERVENLIQKSEHKRR-LP  243 (243)
T ss_pred             HHHHHHHHHHHHHHCCC-CC
T ss_conf             99999999997405529-97