HHsearch alignment for GI: 254780999 and conserved domain: pfam03054
>pfam03054 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.
Probab=99.34 E-value=9.4e-12 Score=96.05 Aligned_cols=147 Identities=24% Similarity=0.312 Sum_probs=93.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCHHHEEEEECCCCC---------CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH--
Q ss_conf 0575215872368999999841495446797324666---------65221356999999721354267758999998--
Q gi|254780999|r 294 KVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKY---------TSPQSLEDAAACAKALGCKYDVLPIHDLVNHF-- 362 (562)
Q Consensus 294 ~~viglSGGiDSal~a~la~~alg~~~v~~~~mp~~~---------~s~~s~~~a~~la~~lg~~~~~i~I~~~~~~~-- 362 (562)
T Consensus 2 kV~VamSGGVDSsVaA~LL~~~-Gy-~V~Gv~m~~w~~~~~~~~~C~~~~d~~dA~~va~~LgIp~~v~d~~~~f~~~Vi 79 (354)
T pfam03054 2 KVVVAMSGGVDSSVAAYLLKEQ-GY-EVIGVFMKNWDEEDEFGHGCCSEEDLADAQRVCEQLGIPLYVVNFEKEYWEKVF 79 (354)
T ss_pred EEEEEECCCHHHHHHHHHHHHC-CC-CEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHH
T ss_conf 6999904789999999999977-99-639999995668876678899889999999999986997899787998758999
Q ss_pred HHHHCCCCCCCCC--CHHHHCCCCHHHHHHHHHHHHH-CCCEECCCCCHHHHHHH---HCCCCC-C--------------
Q ss_conf 8631323468743--1011012330466779888751-69544364324477541---102366-6--------------
Q gi|254780999|r 363 FSLMSQFLQEEPS--GIVAENIQSRIRGNILMALSNH-SKAMLLTTSNKSEISVG---YGTLYG-D-------------- 421 (562)
Q Consensus 363 ~~~~~~~~~~~~~--~~~~eN~qaR~R~~~L~~~an~-~~~lvl~t~nksE~~~G---y~T~~G-D-------------- 421 (562)
T Consensus 80 ~~fv~~Y~~G~TPNPcv~-CN--~~IKFg~l~~~A~~~lGad~iATGHYAri~~~~~~~~L~r~~D~~KDQSYfL~~l~q 156 (354)
T pfam03054 80 EPFLDEYKNGRTPNPDIL-CN--REIKFGALLDYAKQVLGADYLATGHYARVSLNENESELLRGKDKNKDQSYFLSGLSQ 156 (354)
T ss_pred HHHHHHHHCCCCCCCCHH-HC--CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCH
T ss_conf 999999976999984144-18--964389999999986699810447428999049938999899999980178610789
Q ss_pred --CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf --555401017763365899999963
Q gi|254780999|r 422 --MSGGFNPLKDLYKTQVFQLASWRN 445 (562)
Q Consensus 422 --~~g~~~p~~~l~Kt~v~~la~~~n 445 (562)
T Consensus 157 ~~L~~~lFPLG~~~K~eVR~iA~~~g 182 (354)
T pfam03054 157 EQLEKLLFPLGDLTKEEVRKIAKEAG 182 (354)
T ss_pred HHHHHEECCCCCCCHHHHHHHHHHCC
T ss_conf 87643182876885289999999769