RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62] (562 letters) >gnl|CDD|184436 PRK13981, PRK13981, NAD synthetase; Provisional. Length = 540 Score = 829 bits (2144), Expect = 0.0 Identities = 274/558 (49%), Positives = 365/558 (65%), Gaps = 24/558 (4%) Query: 5 LKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKKSFIQ 64 L+IA+AQLNP VGDIAGN AK A EA G DL+LF ELF+SGYPPEDL+ + +F+ Sbjct: 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFLA 60 Query: 65 ACSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAGNIIAVRDKINLPNYSEFH 124 AC +A++ L + T GG ++VG P ++ + N+ +LD G ++A K +LPNY F Sbjct: 61 ACEAALERLAAATA-GGPAVLVGHPWREGGKLYNAAALLDGGEVLATYRKQDLPNYGVFD 119 Query: 125 EKRTFISGYSNDPIVFRDIRLGILICEDIWKNSNICKHLKKQGAEFLFSLNASPYYHNKL 184 EKR F G + + +R+G+ ICEDIW N + L + GAE L NASPY+ K Sbjct: 120 EKRYFAPGPEPGVVELKGVRIGVPICEDIW-NPEPAETLAEAGAELLLVPNASPYHRGKP 178 Query: 185 KKRHEIVTGQISHVHLPIIYVNQVGGQDELIFDGASFCFDGQQQLAFQMKHFSEQNFMTE 244 R ++ ++ LP++Y+NQVGGQDEL+FDGASF + +LA ++ F EQ + + Sbjct: 179 DLREAVLRARVRETGLPLVYLNQVGGQDELVFDGASFVLNADGELAARLPAFEEQIAVVD 238 Query: 245 WHYDQQLSQWNYMSDDSASTMYIPLQEEEADYNACVLSLRDYVQKNNFHKVIIGLSGGID 304 + D+ W + A P + E DY A VL LRDYV+KN F V++GLSGGID Sbjct: 239 F--DRGEDGWRPLPGPIAP----PPEGEAEDYRALVLGLRDYVRKNGFPGVVLGLSGGID 292 Query: 305 SALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPIHDLVNHFFS 364 SAL AAIAVDALG E V+ +M+P +YTS +SL+DAAA AK LG +YD++PI F + Sbjct: 293 SALVAAIAVDALGAERVRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFEAFEA 352 Query: 365 LMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYGDMSG 424 ++ I EN+QSRIRG +LMALSN +++LTT NKSE++VGY TLYGDM+G Sbjct: 353 ALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNKSEMAVGYATLYGDMAG 412 Query: 425 GFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPHQTDQESLP 484 GF P+KD+YKT V++L WRN+ EVIP I+ K PSAELRP+QTDQ+SLP Sbjct: 413 GFAPIKDVYKTLVYRLCRWRNTVS-------PGEVIPERIITKPPSAELRPNQTDQDSLP 465 Query: 485 PYPILDDIIKRIVENEESFINNDQE-----YNDETVRYVEHLLYGSEYKRRQAPVGTKIT 539 PY +LD I++R+VE E+S E ++ TVR VE LLY +EYKRRQA G KIT Sbjct: 466 PYDVLDAILERLVEEEQSV----AEIVAAGFDRATVRRVERLLYIAEYKRRQAAPGVKIT 521 Query: 540 AKSFGRDRLYPISNKFRD 557 ++FGRDR YPI+N+FRD Sbjct: 522 RRAFGRDRRYPITNRFRD 539 >gnl|CDD|184435 PRK13980, PRK13980, NAD synthetase; Provisional. Length = 265 Score = 218 bits (559), Expect = 2e-57 Identities = 96/261 (36%), Positives = 143/261 (54%), Gaps = 23/261 (8%) Query: 283 LRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAAC 342 +R+ V+K V++GLSGGIDSA+ A +AV ALGKENV +++P + P+ LEDA Sbjct: 21 IREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSPPEDLEDAELV 80 Query: 343 AKALGCKYDVLPIHDLVNHFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAML 402 A+ LG +Y V+ I +V+ FFS + + + NI +R R +L +N ++ Sbjct: 81 AEDLGIEYKVIEITPIVDAFFSAI-----PDADRLRVGNIMARTRMVLLYDYANRENRLV 135 Query: 403 LTTSNKSEISVGYGTLYGDMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPP 462 L T NKSE+ +GY T YGD + NP+ DLYKTQV +LA H LG +P Sbjct: 136 LGTGNKSELLLGYFTKYGDGAVDLNPIGDLYKTQVRELA----RH-----LG-----VPE 181 Query: 463 SILEKSPSAELRPHQTDQESLP-PYPILDDIIKRIVEN--EESFINNDQEYNDETVRYVE 519 I+EK PSA+L QTD+ L Y +D+I+ + + I + ++ V V Sbjct: 182 DIIEKPPSADLWEGQTDEGELGFSYETIDEILYLLFDKKMSREEILEELGVPEDLVDRVR 241 Query: 520 HLLYGSEYKRRQAPVGTKITA 540 L+ S++KRR P K++ Sbjct: 242 RLVQRSQHKRR-LPPIPKLSG 261 >gnl|CDD|161924 TIGR00552, nadE, NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity. Length = 250 Score = 211 bits (538), Expect = 5e-55 Identities = 91/251 (36%), Positives = 134/251 (53%), Gaps = 28/251 (11%) Query: 283 LRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAAC 342 LR YVQK+ V++GLSGGIDSA+ AA+ V+ALG++N ++ T Q ++DA A Sbjct: 13 LRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALAL 72 Query: 343 AKALGCKYDVLPIHDLVNHFFSLMSQFLQ--EEPSGIVAENIQSRIRGNILMALSNHSKA 400 A+ LG Y + I + S +Q E + N+++R+R L A++N Sbjct: 73 AEPLGINYKNIDIAPI---AASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNL 129 Query: 401 MLLTTSNKSEISVGYGTLYGDMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVI 460 ++L T NKSE+ +GY T YGD P+ DL+KTQV++LA N + Sbjct: 130 LVLGTGNKSELMLGYFTKYGDGGCDIAPIGDLFKTQVYELAKRLN--------------V 175 Query: 461 PPSILEKSPSAELRPHQTDQESL-PPYPILDDIIKRIVENEESFINNDQEYNDETVRYVE 519 P I+EK P+A+L QTD+ L Y LDD +K I E ++ E V+ +E Sbjct: 176 PERIIEKPPTADLFDGQTDETELGITYDELDDYLKGIEELSQT--------VQEVVKRIE 227 Query: 520 HLLYGSEYKRR 530 L+ SE+KRR Sbjct: 228 SLVQKSEHKRR 238 >gnl|CDD|179454 PRK02628, nadE, NAD synthetase; Reviewed. Length = 679 Score = 148 bits (377), Expect = 3e-36 Identities = 141/563 (25%), Positives = 218/563 (38%), Gaps = 108/563 (19%) Query: 6 KIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKKSFIQA 65 ++A A V D A N A+ A G+ L +F EL +SGY +DL + + + A Sbjct: 14 RVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDA 73 Query: 66 CSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAGNIIAVRDKINLPNYSEFHE 125 A+ TL + D +VVG P + + + N V++ G I+ V K LPNY EF+E Sbjct: 74 VEDALATLVEASADLDPLLVVGAPLRVRHRLYNCAVVIHRGRILGVVPKSYLPNYREFYE 133 Query: 126 KRTFISG----------------YSNDPIVFR-----DIRLGILICEDIWKNSNICKHLK 164 KR F G + D ++F G+ ICED+W + Sbjct: 134 KRWFAPGDGARGETIRLCGQEVPFGTD-LLFEAEDLPGFVFGVEICEDLWVPIPPSSYAA 192 Query: 165 KQGAEFLFSLNASPYYHNKLKKRHEIVTGQISHVHLPIIYVNQVGGQDE----LIFDGAS 220 GA L +L+AS K R +V Q + +Y G E L +DG + Sbjct: 193 LAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAA--AGVGESTTDLAWDGQT 250 Query: 221 FCFDGQQQLAFQMKHFSEQNFMTEWHYDQQL-------------SQWNYMSDDSASTMYI 267 ++ + LA + + F + + D + + + T+ Sbjct: 251 LIYENGELLA-ESERFPREEQLIVADVDLERLRQERLRNGSFDDNARHRDESAPFRTIPF 309 Query: 268 PLQEEEADYNACVLSLRDYVQKNNF--------------------------------HKV 295 L D L LR V++ F KV Sbjct: 310 ALDPPAGD-----LGLRRPVERFPFVPSDPARLDQRCYEAYNIQVSGLAQRLRATGLKKV 364 Query: 296 IIGLSGGIDSA---LCAAIAVDALG--KENVQTIMLPYKYTSPQSLEDAAACAKALGCKY 350 +IG+SGG+DS L AA A+D LG ++N+ +P T+ ++ +A A KALG Sbjct: 365 VIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPGFATTDRTKNNAVALMKALGVTA 424 Query: 351 DVLPIHDLVNHFFSLMSQ-FLQEEPSGIVA-ENIQSRIRGNILMALSNHSKAMLLTTSNK 408 + I + F + EP V EN+Q+ R IL L+N +++ T + Sbjct: 425 REIDIRPAALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTGDL 484 Query: 409 SEISVGYGTLY--GD-MSGGFNPLKDLY-------KTQVFQLASWRNSHGITSGLGPLTE 458 SE+++G+ T Y GD MS Y KT + L W + G Sbjct: 485 SELALGWCT-YGVGDHMS--------HYNVNASVPKTLIQHLIRWVIASG---QFDEAVS 532 Query: 459 VIPPSILEKSPSAELRPHQTDQE 481 + IL+ S EL P + E Sbjct: 533 EVLLDILDTEISPELVPADKEGE 555 >gnl|CDD|179150 PRK00876, nadE, NAD synthetase; Reviewed. Length = 326 Score = 100 bits (251), Expect = 1e-21 Identities = 77/270 (28%), Positives = 114/270 (42%), Gaps = 79/270 (29%) Query: 280 VLSLRDYVQKNNFHK--VIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSL- 336 ++R+ V + + V++GLSGGIDS++ AA+ V ALGKE V +++P + +SP+SL Sbjct: 20 RAAIREQV-RGTLRRRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDSSPESLR 78 Query: 337 ---------------EDAAACAKALGC--KYD------------------VLP---IHDL 358 ED +ALGC + D VLP D Sbjct: 79 LGREVAEHLGVEYVVEDITPALEALGCYRRRDEAIRRVVPEYGPGWKSKIVLPNLLDGDG 138 Query: 359 VNHFFSLMSQFLQEEPS----------GIVA-ENIQSRIRGNILMALSNHSKAM---LLT 404 +N F SL+ Q E + IVA N + R R M H+ + + Sbjct: 139 LNVF-SLVVQDPDGEVTRKRLPANAYLQIVAATNFKQRTR---KMVEYYHADRLNYAVAG 194 Query: 405 TSNKSEISVGYGTLYGDMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSI 464 T N+ E G+ GD + P+ LYKTQV+ LA LG +P I Sbjct: 195 TPNRLEYDQGFFVKNGDGAADLKPIAHLYKTQVYALAEH---------LG-----VPEEI 240 Query: 465 LEKSPSAELRPH-QTDQE---SLPPYPILD 490 + P+ + QT +E +L PY +D Sbjct: 241 RRRPPTTDTYSLPQTQEEFYFAL-PYDRMD 269 >gnl|CDD|177973 PLN02339, PLN02339, NAD+ synthase (glutamine-hydrolysing). Length = 700 Score = 63.9 bits (156), Expect = 9e-11 Identities = 135/614 (21%), Positives = 206/614 (33%), Gaps = 166/614 (27%) Query: 5 LKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKK-SFI 63 LK+A LN D GN+ + + + EA G + EL I+GY ED + + Sbjct: 4 LKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTVT 63 Query: 64 QACSSAIDTLKSDTHDGGAGIV--VGFPRQDQEGVL-NSVVILDAGNIIAVRDKINLPNY 120 + + L D D GI+ +G P GV N V I+ +R K+ L N Sbjct: 64 HSWECLAEILVGDLTD---GILCDIGMPVI-HGGVRYNCRVFCLNRKILLIRPKMWLAND 119 Query: 121 SEFHEKRTFISGYSNDPIV-------------------------FRDIRLGILICEDIWK 155 + E R F + + F D + CE+++ Sbjct: 120 GNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFGDGYLQFLDTAVAAETCEELFT 179 Query: 156 NSNICKHLKKQGAEFLFSLNASPYYHN--KLKKRHEI---VTGQISHVHLPIIYVNQVGG 210 L G E + N S +H KL R ++ T + V+L Y NQ G Sbjct: 180 PQAPHIDLALNGVEII--SNGSGSHHQLRKLNTRLDLIRSATHKCGGVYL---YANQRG- 233 Query: 211 QDELIFDGASFCFDG-------------QQQLAFQ--------------------MKHFS 237 DG +DG Q + Q + F Sbjct: 234 -----CDGGRLYYDGCACIVVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFR 288 Query: 238 EQ----NFMTEWHYDQQLSQWNYMSDDSASTMYIPL-------QEEEADYNACVLSLRDY 286 EQ + +L + PL +EE A AC L DY Sbjct: 289 EQASSKKRVPSVAVPFKLCP----PFSLSLVPSSPLKIRYHSPEEEIALGPAC--WLWDY 342 Query: 287 VQKNNFHKVIIGLSGGIDSALCAAI-------------------AVDA------------ 315 ++++ ++ LSGG DS+ AAI DA Sbjct: 343 LRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVP 402 Query: 316 -----LGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPIHDLVNHFFSLMSQFL 370 K T+ + + +S ++ A A +G + + I +V+ SL Sbjct: 403 TDSKEFAKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDGVVSAVLSLFQTLT 462 Query: 371 QEEP-----SGIVAEN-----IQSRIRGNILMALSN-----HSKA---MLLTTSNKSEIS 412 + P G AEN IQ+RIR + L++ K+ ++L ++N E Sbjct: 463 GKRPRYKVDGGSNAENLALQNIQARIRMVLAFMLASLLPWVRGKSGFLLVLGSANVDEGL 522 Query: 413 VGYGTLYGDMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAE 472 GY T Y S NP+ + K + W ++ G L EV P+AE Sbjct: 523 RGYLTKYDCSSADINPIGGISKQDLRSFLRWAATN---LGYPSLAEVE-----AAPPTAE 574 Query: 473 LRP-----HQTDQE 481 L P QTD+E Sbjct: 575 LEPIRDDYSQTDEE 588 >gnl|CDD|163242 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. Length = 279 Score = 61.2 bits (149), Expect = 8e-10 Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 24/238 (10%) Query: 5 LKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGY---PPEDLVFKKS 61 + +A Q+ D+ NIA+A R EA +G +IL ELF Y ++ F + Sbjct: 1 VTVAALQMACS-DDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALA 59 Query: 62 FIQACSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDA-GNIIAVRDKINLPNY 120 AI ++ + G I V F + NS+ ++DA G+++ V K ++P+ Sbjct: 60 QPVEGHPAIKRFQALAKELGVVIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDG 119 Query: 121 SEFHEKRTFISGYSNDPIVF-----RDIRLGILICEDIWKNSNICKHLKKQGAEFLF--- 172 + EK F G + F R R+G+ IC D W + + GAE LF Sbjct: 120 PGYQEKFYFRPGDTG----FKVWDTRYGRIGVGICWDQWF-PETARAMALMGAEVLFYPT 174 Query: 173 SLNASPYYHNKLKKRH--EIVTGQISHVHLPIIYVNQVG----GQDELIFDGASFCFD 224 ++ + P+ + + H ++ G + +P++ N++G E F G+SF D Sbjct: 175 AIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSFIAD 232 >gnl|CDD|129369 TIGR00268, TIGR00268, conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server. Length = 252 Score = 53.3 bits (128), Expect = 2e-07 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 4/80 (5%) Query: 283 LRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAAC 342 LR+++++ F KV+I SGG+DS+L AA+ DA V I + SP+ LEDA Sbjct: 5 LRNFLKE--FKKVLIAYSGGVDSSLLAAVCSDAG--TEVLAITVVSPSISPRELEDAIII 60 Query: 343 AKALGCKYDVLPIHDLVNHF 362 AK +G ++ + I ++N F Sbjct: 61 AKEIGVNHEFVKIDKMINPF 80 >gnl|CDD|185554 PTZ00323, PTZ00323, NAD+ synthase; Provisional. Length = 294 Score = 49.4 bits (118), Expect = 3e-06 Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 53/229 (23%) Query: 283 LRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDALGKEN---------VQTIMLPYKYTSP 333 L +Y+++ + +SGGIDSA+ A+ A+ N Q I ++S Sbjct: 37 LNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPI-----HSSA 91 Query: 334 QSLEDAAACAKALGCKYDVLPIHDLVNHFFSLMSQFLQEEPSGIVAENIQSRIRGNI--- 390 +L +A G + D L S L E+ GI RG + Sbjct: 92 WALNRGRENIQACGATEVTV---DQTEIHTQLSS--LVEKAVGIKGGAFA---RGQLRSY 143 Query: 391 -----------LMALSNHSKAMLLTTSNKSEIS-VGYGTLYGDMSGGFNPLKDLYKTQVF 438 L++ + A+++ T N E +GY GD + DL+K++VF Sbjct: 144 MRTPVAFYVAQLLS-QEGTPAVVMGTGNFDEDGYLGYFCKAGDGVVDVQLISDLHKSEVF 202 Query: 439 QLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPHQTDQESLP-PY 486 +A LG +P + L+ +PSA+L QTD++ L PY Sbjct: 203 LVARE---------LG-----VPENTLQAAPSADLWEGQTDEDELGFPY 237 >gnl|CDD|178348 PLN02747, PLN02747, N-carbamolyputrescine amidase. Length = 296 Score = 47.5 bits (113), Expect = 9e-06 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 18/167 (10%) Query: 17 GDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKKSFIQACSS-----AID 71 D A N+ KA R EA+ +G ++IL ELF Y + ++ F Q I Sbjct: 18 DDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQ--AQREDFFQRAKPYEGHPTIA 75 Query: 72 TLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDA-GNIIAVRDKINLPNYSEFHEKRTFI 130 ++ + G I V F + NS+ I+DA G + + K ++P+ + EK F Sbjct: 76 RMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFN 135 Query: 131 SGYSNDPIVFRDI-----RLGILICEDIWKNSNICKHLKKQGAEFLF 172 G + F+ ++G+ IC D W + + QGAE L Sbjct: 136 PGDTG----FKVFDTKFAKIGVAICWDQW-FPEAARAMVLQGAEVLL 177 >gnl|CDD|129461 TIGR00364, TIGR00364, exsB protein. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown. Length = 201 Score = 46.2 bits (110), Expect = 2e-05 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 296 IIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPI 355 ++ LSGG DS C AIA D V I Y + LE A A+ALG ++ V+ + Sbjct: 2 VVVLSGGQDSTTCLAIAKD--EGYEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDL 59 Query: 356 HDLVNHF 362 L+ Sbjct: 60 -SLLKQL 65 >gnl|CDD|179116 PRK00768, nadE, NAD synthetase; Reviewed. Length = 268 Score = 44.4 bits (106), Expect = 8e-05 Identities = 61/250 (24%), Positives = 96/250 (38%), Gaps = 85/250 (34%) Query: 283 LRDYVQKNNFHKVIIGLSGGIDSALC---AAIAVDALGKENVQT------IMLPYKYTSP 333 L+DY++K+ +++G+SGG DS L A +AV+ L E + LPY Sbjct: 29 LKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGV--- 85 Query: 334 QSLEDAAACAKALGCKYDVLPIHDLVNHFFSLMSQFLQEEPSGIVAENIQSR-------- 385 Q+ D AL F+Q P ++ NI+ Sbjct: 86 QA--DEDDAQDAL---------------------AFIQ--PDRVLTVNIKPAVDASVAAL 120 Query: 386 ----------IRGNI----LM----ALSNHSKAMLLTTSNKSEISVGYGTLYGDMSGG-- 425 ++GNI M A++ + +++ T + +E G+ T +GD GG Sbjct: 121 EAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDHAAEAVTGFFTKFGD--GGAD 178 Query: 426 FNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSA---ELRPHQTDQES 482 PL L K Q L + LG P + EK P+A + RP D+ + Sbjct: 179 ILPLFGLNKRQGRALLAA---------LGA-----PEHLYEKVPTADLEDDRPGLPDEVA 224 Query: 483 LP-PYPILDD 491 L Y +DD Sbjct: 225 LGVTYDQIDD 234 >gnl|CDD|178898 PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed. Length = 346 Score = 43.9 bits (105), Expect = 1e-04 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Query: 293 HKVIIGLSGGIDSALCAAIAVDALGKENV--------QTIMLPYKY-TSPQSLEDAAACA 343 +V++G+SGG+DS++ AA+ + G E + + + + DA A Sbjct: 1 KRVVVGMSGGVDSSVAAALLKEQ-GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVA 59 Query: 344 KALGCKYDVL 353 LG + V+ Sbjct: 60 DKLGIPHYVV 69 >gnl|CDD|148238 pfam06508, ExsB, ExsB. This family includes putative transcriptional regulators from Bacteria and Archaea. Length = 137 Score = 40.6 bits (96), Expect = 0.001 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 6/64 (9%) Query: 294 KVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQS--LEDAAACAKALGCKYD 351 K ++ LSGG+DS C A A G E L + Y S LE A AKALG ++ Sbjct: 1 KAVVLLSGGLDSTTCLAWAKKE-GYE---VYALTFDYGQRHSKELECAKKIAKALGVEHK 56 Query: 352 VLPI 355 ++ + Sbjct: 57 IVDL 60 >gnl|CDD|179167 PRK00919, PRK00919, GMP synthase subunit B; Validated. Length = 307 Score = 40.3 bits (95), Expect = 0.001 Identities = 13/24 (54%), Positives = 18/24 (75%) Query: 294 KVIIGLSGGIDSALCAAIAVDALG 317 K II LSGG+DS++ A +A A+G Sbjct: 23 KAIIALSGGVDSSVAAVLAHRAIG 46 >gnl|CDD|178395 PLN02798, PLN02798, nitrilase. Length = 286 Score = 39.3 bits (92), Expect = 0.003 Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 45/177 (25%) Query: 3 KKLKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKKSF 62 +++A+AQ+ D+A N A R +EA G L+ E F SF Sbjct: 9 SSVRVAVAQMTST-NDLAANFATCSRLAKEAAAAGAKLLFLPECF-------------SF 54 Query: 63 IQACSSAIDTLK-SDTHDG-----------GAGIVV---GFPR--QDQEGVLNS-VVILD 104 I ++L ++ DG +G+ + GF D + N+ V+I D Sbjct: 55 IGD--KDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDD 112 Query: 105 AGNIIAVRDKINL-----PNYSEFHEKRTFISGYSNDPIVFRDI---RLGILICEDI 153 +G I + KI+L P E G IV D RLG+ +C D+ Sbjct: 113 SGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPG---KTIVAVDSPVGRLGLTVCYDL 166 >gnl|CDD|178120 PLN02504, PLN02504, nitrilase. Length = 346 Score = 39.0 bits (91), Expect = 0.004 Identities = 17/44 (38%), Positives = 22/44 (50%) Query: 9 IAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYP 52 + Q + V D + KA R EA G L++F E FI GYP Sbjct: 29 VVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYP 72 >gnl|CDD|162088 TIGR00884, guaA_Cterm, GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit. Length = 311 Score = 36.9 bits (86), Expect = 0.015 Identities = 14/25 (56%), Positives = 19/25 (76%) Query: 294 KVIIGLSGGIDSALCAAIAVDALGK 318 KVII LSGG+DS++ A +A A+G Sbjct: 18 KVIIALSGGVDSSVAAVLAHRAIGD 42 >gnl|CDD|161871 TIGR00420, trmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea. Length = 352 Score = 36.6 bits (85), Expect = 0.020 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%) Query: 294 KVIIGLSGGIDSALCAAI------AVDALGKEN-VQTIMLPYKY-TSPQSLEDAAACAKA 345 KVI+GLSGG+DS++ A + V + +N + TS + L DA A + Sbjct: 2 KVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEK 61 Query: 346 LGCKYDVLP-IHDLVNHFFSLMSQFLQE 372 LG + + + N F Q +E Sbjct: 62 LGIPLEKVNFQKEYWNKVFEPFIQEYKE 89 >gnl|CDD|178842 PRK00074, guaA, GMP synthase; Reviewed. Length = 511 Score = 36.2 bits (85), Expect = 0.023 Identities = 13/25 (52%), Positives = 19/25 (76%) Query: 294 KVIIGLSGGIDSALCAAIAVDALGK 318 KVI+GLSGG+DS++ A + A+G Sbjct: 217 KVILGLSGGVDSSVAAVLLHKAIGD 241 >gnl|CDD|173128 PRK14665, mnmA, tRNA-specific 2-thiouridylase MnmA; Provisional. Length = 360 Score = 34.5 bits (79), Expect = 0.080 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 7/70 (10%) Query: 287 VQKNNFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYT-SPQSLEDAAACAKA 345 ++KN +V++G+SGG DS++ A + ++A G E Y++ S + LEDA A A+ Sbjct: 2 MEKNK--RVLLGMSGGTDSSVAAMLLLEA-GYEVTGVTFRFYEFNGSTEYLEDARALAER 58 Query: 346 LGCK---YDV 352 LG YD Sbjct: 59 LGIGHITYDA 68 >gnl|CDD|178970 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed. Length = 505 Score = 33.7 bits (78), Expect = 0.11 Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 46/204 (22%) Query: 3 KKLKIAIAQLN--------PVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPE 54 LK+A+ Q N P + + K A DLI++ E + P Sbjct: 218 PALKVALVQGNIPQSLKWDP--AGLEATLQKYLDLSRPALGPA-DLIIWPE---TAIPF- 270 Query: 55 DLVFKKSFIQACSSAIDTLKSDTHDGGAGIVVGFPRQDQEG----VLNSVVILDAGNIIA 110 + QA A+D L + G+ ++ G PR + + NS+ +L I+ Sbjct: 271 ---LLEDLPQAFLKALDDLAREK---GSALITGAPRAENKQGRYDYYNSIYVLGPYGILN 324 Query: 111 VRDKINL-------PNYSEFHEKRTF----ISGYS-----NDPIVFRDIRLGILIC-EDI 153 DK +L P S F + +S P++ + ++L LIC E I Sbjct: 325 RYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGPYVQPPLLAKGLKLAPLICYEII 384 Query: 154 WKNSNICKHLKKQGAEFLFSLNAS 177 + + +QGA+ L LN S Sbjct: 385 F--PEEVRANVRQGADLL--LNIS 404 >gnl|CDD|182963 PRK11101, glpA, sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional. Length = 546 Score = 33.8 bits (78), Expect = 0.11 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%) Query: 46 LFISGYPPEDLVFKKSFIQACSSA-IDT 72 LFI+ P +DL F+ +FI+AC A I+ Sbjct: 90 LFIT-LPEDDLAFQATFIRACEEAGIEA 116 >gnl|CDD|147794 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA). This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host. Length = 447 Score = 33.0 bits (76), Expect = 0.20 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Query: 175 NASPYY--HNKLKKRHEIVTGQISHVHLPIIYVNQV 208 NA YY + KLK+ E V QI I Y+ V Sbjct: 373 NAQKYYKKYKKLKRAVEAVEEQIEETKEEIEYLESV 408 >gnl|CDD|163136 TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases. Length = 589 Score = 30.4 bits (69), Expect = 1.4 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 273 EADYNACVL-SLRDYVQKNNFHKVIIG--LSGGIDSALCAAIAVDALGKENVQT 323 EAD+ +L +LR V++ V +G LSGG+DS+L + +A G + ++T Sbjct: 238 EADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEA-GVDGLRT 290 >gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing). Length = 578 Score = 30.1 bits (68), Expect = 1.6 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 13/68 (19%) Query: 251 LSQW---NYMSDDSASTMYIPLQEEEADYNACVLSLRDYVQKNNFHKVIIG--LSGGIDS 305 +W + S+ ST Y PL EA V K V G LSGG+DS Sbjct: 187 FRRWYNPPWFSESIPSTPYDPLVLREA--------FEKAVIKRLMTDVPFGVLLSGGLDS 238 Query: 306 ALCAAIAV 313 +L A+IA Sbjct: 239 SLVASIAA 246 >gnl|CDD|162406 TIGR01536, asn_synth_AEB, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. Length = 467 Score = 29.6 bits (67), Expect = 2.2 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 11/99 (11%) Query: 283 LRDYVQKNNFHKVIIG--LSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLED-- 338 L D V++ V +G LSGG+DS+L AAIA + V T + + ++ Sbjct: 242 LEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSI--GFEGSPDFDESP 299 Query: 339 -AAACAKALGCKYDVLPIH--DLVNHFFSLMSQFLQEEP 374 A A LG ++ + + ++ ++ + E+P Sbjct: 300 YARKVADHLGTEHHEVLFSVEEGLDALPEVI--YHLEDP 336 >gnl|CDD|181851 PRK09431, asnB, asparagine synthetase B; Provisional. Length = 554 Score = 29.5 bits (67), Expect = 2.6 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Query: 269 LQEEEADYNACVLSLRDYVQKNNFHKVIIG--LSGGIDSALCAAIA 312 +++ D N +L V+K V G LSGG+DS+L +AIA Sbjct: 202 VKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIA 247 >gnl|CDD|177376 PHA02541, 23, major capsid protein; Provisional. Length = 518 Score = 29.0 bits (65), Expect = 3.4 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%) Query: 479 DQESLPPYPILD----DIIKRIVENEESFINNDQEYNDETV 515 + E LP I D ++ +I+EN+E I + Y DE + Sbjct: 15 EHEGLPE--IADASKQAVVAKILENQEKDIREEPVYRDEKI 53 >gnl|CDD|115704 pfam07068, Gp23, Major capsid protein Gp23. This family contains a number of major capsid Gp23 proteins approximately 500 residues long, from T4-like bacteriophages. Length = 493 Score = 28.8 bits (64), Expect = 3.6 Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 492 IIKRIVENEESFINNDQEYNDETV 515 II +I EN+E EY DE + Sbjct: 24 IIAKIFENQEKDFEVSPEYKDEKI 47 >gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase. Length = 405 Score = 28.7 bits (64), Expect = 3.8 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 99 SVVILDAGNIIAVRDKINLPNYSEFHEKRTFISGYSNDPIVFRDI--RLGILIC 150 +VVI + GNII K ++P +F+E ++ G + P VF ++ + IC Sbjct: 194 AVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHP-VFETAFGKIAVNIC 246 >gnl|CDD|173127 PRK14664, PRK14664, tRNA-specific 2-thiouridylase MnmA; Provisional. Length = 362 Score = 28.8 bits (64), Expect = 4.1 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 12/80 (15%) Query: 289 KNNFHKVIIGLSGGIDS-ALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALG 347 K + +V++G+SGGIDS A C + + G E V M + PQ DA A +G Sbjct: 2 KESKKRVLVGMSGGIDSTATC--LMLQEQGYEIVGVTMRVWG-DEPQ---DARELAARMG 55 Query: 348 CKYDV----LPIHD-LVNHF 362 ++ V +P D +V +F Sbjct: 56 IEHYVADERVPFKDTIVKNF 75 >gnl|CDD|131508 TIGR02455, TreS_stutzeri, trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits. Length = 688 Score = 28.4 bits (63), Expect = 4.9 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 14/117 (11%) Query: 163 LKKQGAEFLFSLNASPYYHNKLKKRHEIVTGQISHVHLPIIYVNQVGGQDELIFDGASF- 221 + GA+ + P YH H ++TG + L + ++ G D AS Sbjct: 349 MSHGGADLSYDFITRPAYH------HALLTGDTEFLRLMLKEMHAFG------IDPASLI 396 Query: 222 -CFDGQQQLAFQMKHFSEQNFMTEWHYDQQLSQWNYMSDDSASTMYIPLQEEEADYN 277 +L ++ HF + +HY Q ++ + +Y L E A YN Sbjct: 397 HALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYN 453 >gnl|CDD|163334 TIGR03573, WbuX, N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an invariable contextual association with homologs of the HisH and HisF proteins known as WbuY and WbuZ, respectively. These two proteins are believed to supply the enzyme with ammonium by hydrolysis of glutamine and delivery through an ammonium conduit. Length = 343 Score = 28.0 bits (63), Expect = 5.8 Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 290 NNFHKVIIGLSGGIDSALCAAIAVDALG 317 + IIG+SGG DS A + LG Sbjct: 57 GGRYDCIIGVSGGKDSTYQAHVLKKKLG 84 >gnl|CDD|184719 PRK14511, PRK14511, maltooligosyl trehalose synthase; Provisional. Length = 879 Score = 28.0 bits (63), Expect = 5.9 Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 420 GDMSGGFNPLKDLYKTQVFQLASWR 444 G G + L L + Q ++LASWR Sbjct: 226 GRKGDGRSRLDRLLERQHYRLASWR 250 >gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional. Length = 448 Score = 27.7 bits (62), Expect = 7.4 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 484 PPYPILDDIIKRIVENEESF 503 PP PI ++I K+I+ +EE Sbjct: 379 PPAPIAEEIKKKIIGDEEVI 398 >gnl|CDD|177981 PLN02347, PLN02347, GMP synthetase. Length = 536 Score = 27.7 bits (62), Expect = 7.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 295 VIIGLSGGIDSALCAAIAVDALG 317 VI LSGG+DS + A + A+G Sbjct: 232 VICALSGGVDSTVAATLVHKAIG 254 >gnl|CDD|177868 PLN02222, PLN02222, phosphoinositide phospholipase C 2. Length = 581 Score = 27.7 bits (61), Expect = 7.9 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 6/53 (11%) Query: 491 DIIKRIVENEESFINNDQEYNDETVRYVEHLLYGSEYKRRQAPVGTKITAKSF 543 D ++R+ +EE ++Y + VR+ +H L R P GT++T+ ++ Sbjct: 340 DKVRRLSLSEEQLEKAAEKYAKQIVRFTQHNLL------RIYPKGTRVTSSNY 386 >gnl|CDD|162182 TIGR01061, parC_Gpos, DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. Length = 738 Score = 27.8 bits (62), Expect = 7.9 Identities = 11/27 (40%), Positives = 14/27 (51%) Query: 174 LNASPYYHNKLKKRHEIVTGQISHVHL 200 +N S Y K KR EIV G I + + Sbjct: 355 INRSKYELEKASKRLEIVEGLIKAISI 381 >gnl|CDD|161895 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however. Length = 798 Score = 27.6 bits (62), Expect = 8.2 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%) Query: 115 INLPNYSEFHEKRTFISGYSNDPIVFRDIRLGILICEDIWKNSNICKHLKKQGAEFLFSL 174 ++L E +K S P V RDI L+ +D+ + I K +KK G E L + Sbjct: 686 LDLDRLLESLKKVPKYRPISKFPAVTRDI--SFLVPKDV-PANEIIKLIKKSGLELLEEV 742 Query: 175 NA-SPYYHNKLKKRHEIVT 192 Y + + + + Sbjct: 743 ELFDVYEGKNIGEGKKSLA 761 >gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional. Length = 586 Score = 27.8 bits (62), Expect = 8.9 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 268 PLQEEEADYNACVLSLRDYVQKNNFHKVIIG--LSGGIDSALCAAIAVDALGKEN 320 P+ E D +L V+K V G LSGG+DS++ AAI + Sbjct: 211 PIPTGEIDLEEIREALEAAVRKRLMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGE 265 >gnl|CDD|183890 PRK13200, psaA, photosystem I P700 chlorophyll a apoprotein A1; Provisional. Length = 766 Score = 27.4 bits (61), Expect = 9.5 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%) Query: 413 VGYGTLYGDMSGGFNPLKDLYKTQVFQLASWRNSHGITS 451 VG L GD+ GGF+ ++ + +FQL WR GIT+ Sbjct: 121 VGQEILNGDVGGGFHGIQ--ITSGLFQL--WRAW-GITN 154 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.136 0.398 Gapped Lambda K H 0.267 0.0731 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 9,310,517 Number of extensions: 612915 Number of successful extensions: 1228 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1209 Number of HSP's successfully gapped: 49 Length of query: 562 Length of database: 5,994,473 Length adjustment: 98 Effective length of query: 464 Effective length of database: 3,876,889 Effective search space: 1798876496 Effective search space used: 1798876496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (26.9 bits)