RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus
Liberibacter asiaticus str. psy62]
         (562 letters)



>gnl|CDD|184436 PRK13981, PRK13981, NAD synthetase; Provisional.
          Length = 540

 Score =  829 bits (2144), Expect = 0.0
 Identities = 274/558 (49%), Positives = 365/558 (65%), Gaps = 24/558 (4%)

Query: 5   LKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKKSFIQ 64
           L+IA+AQLNP VGDIAGN AK   A  EA   G DL+LF ELF+SGYPPEDL+ + +F+ 
Sbjct: 1   LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFLA 60

Query: 65  ACSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAGNIIAVRDKINLPNYSEFH 124
           AC +A++ L + T  GG  ++VG P ++   + N+  +LD G ++A   K +LPNY  F 
Sbjct: 61  ACEAALERLAAATA-GGPAVLVGHPWREGGKLYNAAALLDGGEVLATYRKQDLPNYGVFD 119

Query: 125 EKRTFISGYSNDPIVFRDIRLGILICEDIWKNSNICKHLKKQGAEFLFSLNASPYYHNKL 184
           EKR F  G     +  + +R+G+ ICEDIW N    + L + GAE L   NASPY+  K 
Sbjct: 120 EKRYFAPGPEPGVVELKGVRIGVPICEDIW-NPEPAETLAEAGAELLLVPNASPYHRGKP 178

Query: 185 KKRHEIVTGQISHVHLPIIYVNQVGGQDELIFDGASFCFDGQQQLAFQMKHFSEQNFMTE 244
             R  ++  ++    LP++Y+NQVGGQDEL+FDGASF  +   +LA ++  F EQ  + +
Sbjct: 179 DLREAVLRARVRETGLPLVYLNQVGGQDELVFDGASFVLNADGELAARLPAFEEQIAVVD 238

Query: 245 WHYDQQLSQWNYMSDDSASTMYIPLQEEEADYNACVLSLRDYVQKNNFHKVIIGLSGGID 304
           +  D+    W  +    A     P + E  DY A VL LRDYV+KN F  V++GLSGGID
Sbjct: 239 F--DRGEDGWRPLPGPIAP----PPEGEAEDYRALVLGLRDYVRKNGFPGVVLGLSGGID 292

Query: 305 SALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPIHDLVNHFFS 364
           SAL AAIAVDALG E V+ +M+P +YTS +SL+DAAA AK LG +YD++PI      F +
Sbjct: 293 SALVAAIAVDALGAERVRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFEAFEA 352

Query: 365 LMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYGDMSG 424
            ++         I  EN+QSRIRG +LMALSN   +++LTT NKSE++VGY TLYGDM+G
Sbjct: 353 ALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNKSEMAVGYATLYGDMAG 412

Query: 425 GFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPHQTDQESLP 484
           GF P+KD+YKT V++L  WRN+           EVIP  I+ K PSAELRP+QTDQ+SLP
Sbjct: 413 GFAPIKDVYKTLVYRLCRWRNTVS-------PGEVIPERIITKPPSAELRPNQTDQDSLP 465

Query: 485 PYPILDDIIKRIVENEESFINNDQE-----YNDETVRYVEHLLYGSEYKRRQAPVGTKIT 539
           PY +LD I++R+VE E+S      E     ++  TVR VE LLY +EYKRRQA  G KIT
Sbjct: 466 PYDVLDAILERLVEEEQSV----AEIVAAGFDRATVRRVERLLYIAEYKRRQAAPGVKIT 521

Query: 540 AKSFGRDRLYPISNKFRD 557
            ++FGRDR YPI+N+FRD
Sbjct: 522 RRAFGRDRRYPITNRFRD 539


>gnl|CDD|184435 PRK13980, PRK13980, NAD synthetase; Provisional.
          Length = 265

 Score =  218 bits (559), Expect = 2e-57
 Identities = 96/261 (36%), Positives = 143/261 (54%), Gaps = 23/261 (8%)

Query: 283 LRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAAC 342
           +R+ V+K     V++GLSGGIDSA+ A +AV ALGKENV  +++P   + P+ LEDA   
Sbjct: 21  IREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSPPEDLEDAELV 80

Query: 343 AKALGCKYDVLPIHDLVNHFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAML 402
           A+ LG +Y V+ I  +V+ FFS +      +   +   NI +R R  +L   +N    ++
Sbjct: 81  AEDLGIEYKVIEITPIVDAFFSAI-----PDADRLRVGNIMARTRMVLLYDYANRENRLV 135

Query: 403 LTTSNKSEISVGYGTLYGDMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPP 462
           L T NKSE+ +GY T YGD +   NP+ DLYKTQV +LA     H     LG     +P 
Sbjct: 136 LGTGNKSELLLGYFTKYGDGAVDLNPIGDLYKTQVRELA----RH-----LG-----VPE 181

Query: 463 SILEKSPSAELRPHQTDQESLP-PYPILDDIIKRIVEN--EESFINNDQEYNDETVRYVE 519
            I+EK PSA+L   QTD+  L   Y  +D+I+  + +       I  +    ++ V  V 
Sbjct: 182 DIIEKPPSADLWEGQTDEGELGFSYETIDEILYLLFDKKMSREEILEELGVPEDLVDRVR 241

Query: 520 HLLYGSEYKRRQAPVGTKITA 540
            L+  S++KRR  P   K++ 
Sbjct: 242 RLVQRSQHKRR-LPPIPKLSG 261


>gnl|CDD|161924 TIGR00552, nadE, NAD+ synthetase.  NAD+ synthetase is a nearly
           ubiquitous enzyme for the final step in the biosynthesis
           of the essensial cofactor NAD. The member of this family
           from Bacillus subtilis is a strictly NH(3)-dependent
           NAD(+) synthetase of 272 amino acids. Proteins
           consisting only of the domain modeled here may be named
           as NH3-dependent NAD+ synthetase. Amidotransferase
           activity may reside in a separate protein, or not be
           present. Some other members of the family, such as from
           Mycobacterium tuberculosis, are considerably longer,
           contain an apparent amidotransferase domain, and show
           glutamine-dependent as well as NH(3)-dependent activity.
          Length = 250

 Score =  211 bits (538), Expect = 5e-55
 Identities = 91/251 (36%), Positives = 134/251 (53%), Gaps = 28/251 (11%)

Query: 283 LRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAAC 342
           LR YVQK+    V++GLSGGIDSA+ AA+ V+ALG++N   ++     T  Q ++DA A 
Sbjct: 13  LRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALAL 72

Query: 343 AKALGCKYDVLPIHDLVNHFFSLMSQFLQ--EEPSGIVAENIQSRIRGNILMALSNHSKA 400
           A+ LG  Y  + I  +     S  +Q     E    +   N+++R+R   L A++N    
Sbjct: 73  AEPLGINYKNIDIAPI---AASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNL 129

Query: 401 MLLTTSNKSEISVGYGTLYGDMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVI 460
           ++L T NKSE+ +GY T YGD      P+ DL+KTQV++LA   N              +
Sbjct: 130 LVLGTGNKSELMLGYFTKYGDGGCDIAPIGDLFKTQVYELAKRLN--------------V 175

Query: 461 PPSILEKSPSAELRPHQTDQESL-PPYPILDDIIKRIVENEESFINNDQEYNDETVRYVE 519
           P  I+EK P+A+L   QTD+  L   Y  LDD +K I E  ++          E V+ +E
Sbjct: 176 PERIIEKPPTADLFDGQTDETELGITYDELDDYLKGIEELSQT--------VQEVVKRIE 227

Query: 520 HLLYGSEYKRR 530
            L+  SE+KRR
Sbjct: 228 SLVQKSEHKRR 238


>gnl|CDD|179454 PRK02628, nadE, NAD synthetase; Reviewed.
          Length = 679

 Score =  148 bits (377), Expect = 3e-36
 Identities = 141/563 (25%), Positives = 218/563 (38%), Gaps = 108/563 (19%)

Query: 6   KIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKKSFIQA 65
           ++A A     V D A N A+       A   G+ L +F EL +SGY  +DL  + + + A
Sbjct: 14  RVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDA 73

Query: 66  CSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAGNIIAVRDKINLPNYSEFHE 125
              A+ TL   + D    +VVG P + +  + N  V++  G I+ V  K  LPNY EF+E
Sbjct: 74  VEDALATLVEASADLDPLLVVGAPLRVRHRLYNCAVVIHRGRILGVVPKSYLPNYREFYE 133

Query: 126 KRTFISG----------------YSNDPIVFR-----DIRLGILICEDIWKNSNICKHLK 164
           KR F  G                +  D ++F          G+ ICED+W       +  
Sbjct: 134 KRWFAPGDGARGETIRLCGQEVPFGTD-LLFEAEDLPGFVFGVEICEDLWVPIPPSSYAA 192

Query: 165 KQGAEFLFSLNASPYYHNKLKKRHEIVTGQISHVHLPIIYVNQVGGQDE----LIFDGAS 220
             GA  L +L+AS     K   R  +V  Q +      +Y     G  E    L +DG +
Sbjct: 193 LAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAA--AGVGESTTDLAWDGQT 250

Query: 221 FCFDGQQQLAFQMKHFSEQNFMTEWHYDQQL-------------SQWNYMSDDSASTMYI 267
             ++  + LA + + F  +  +     D +              +  +        T+  
Sbjct: 251 LIYENGELLA-ESERFPREEQLIVADVDLERLRQERLRNGSFDDNARHRDESAPFRTIPF 309

Query: 268 PLQEEEADYNACVLSLRDYVQKNNF--------------------------------HKV 295
            L     D     L LR  V++  F                                 KV
Sbjct: 310 ALDPPAGD-----LGLRRPVERFPFVPSDPARLDQRCYEAYNIQVSGLAQRLRATGLKKV 364

Query: 296 IIGLSGGIDSA---LCAAIAVDALG--KENVQTIMLPYKYTSPQSLEDAAACAKALGCKY 350
           +IG+SGG+DS    L AA A+D LG  ++N+    +P   T+ ++  +A A  KALG   
Sbjct: 365 VIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPGFATTDRTKNNAVALMKALGVTA 424

Query: 351 DVLPIHDLVNHFFSLMSQ-FLQEEPSGIVA-ENIQSRIRGNILMALSNHSKAMLLTTSNK 408
             + I          +   F + EP   V  EN+Q+  R  IL  L+N    +++ T + 
Sbjct: 425 REIDIRPAALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTGDL 484

Query: 409 SEISVGYGTLY--GD-MSGGFNPLKDLY-------KTQVFQLASWRNSHGITSGLGPLTE 458
           SE+++G+ T Y  GD MS         Y       KT +  L  W  + G          
Sbjct: 485 SELALGWCT-YGVGDHMS--------HYNVNASVPKTLIQHLIRWVIASG---QFDEAVS 532

Query: 459 VIPPSILEKSPSAELRPHQTDQE 481
            +   IL+   S EL P   + E
Sbjct: 533 EVLLDILDTEISPELVPADKEGE 555


>gnl|CDD|179150 PRK00876, nadE, NAD synthetase; Reviewed.
          Length = 326

 Score =  100 bits (251), Expect = 1e-21
 Identities = 77/270 (28%), Positives = 114/270 (42%), Gaps = 79/270 (29%)

Query: 280 VLSLRDYVQKNNFHK--VIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSL- 336
             ++R+ V +    +  V++GLSGGIDS++ AA+ V ALGKE V  +++P + +SP+SL 
Sbjct: 20  RAAIREQV-RGTLRRRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDSSPESLR 78

Query: 337 ---------------EDAAACAKALGC--KYD------------------VLP---IHDL 358
                          ED     +ALGC  + D                  VLP     D 
Sbjct: 79  LGREVAEHLGVEYVVEDITPALEALGCYRRRDEAIRRVVPEYGPGWKSKIVLPNLLDGDG 138

Query: 359 VNHFFSLMSQFLQEEPS----------GIVA-ENIQSRIRGNILMALSNHSKAM---LLT 404
           +N F SL+ Q    E +           IVA  N + R R    M    H+  +   +  
Sbjct: 139 LNVF-SLVVQDPDGEVTRKRLPANAYLQIVAATNFKQRTR---KMVEYYHADRLNYAVAG 194

Query: 405 TSNKSEISVGYGTLYGDMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSI 464
           T N+ E   G+    GD +    P+  LYKTQV+ LA           LG     +P  I
Sbjct: 195 TPNRLEYDQGFFVKNGDGAADLKPIAHLYKTQVYALAEH---------LG-----VPEEI 240

Query: 465 LEKSPSAELRPH-QTDQE---SLPPYPILD 490
             + P+ +     QT +E   +L PY  +D
Sbjct: 241 RRRPPTTDTYSLPQTQEEFYFAL-PYDRMD 269


>gnl|CDD|177973 PLN02339, PLN02339, NAD+ synthase (glutamine-hydrolysing).
          Length = 700

 Score = 63.9 bits (156), Expect = 9e-11
 Identities = 135/614 (21%), Positives = 206/614 (33%), Gaps = 166/614 (27%)

Query: 5   LKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKK-SFI 63
           LK+A   LN    D  GN+ + + +  EA   G    +  EL I+GY  ED   +  +  
Sbjct: 4   LKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTVT 63

Query: 64  QACSSAIDTLKSDTHDGGAGIV--VGFPRQDQEGVL-NSVVILDAGNIIAVRDKINLPNY 120
            +     + L  D  D   GI+  +G P     GV  N  V      I+ +R K+ L N 
Sbjct: 64  HSWECLAEILVGDLTD---GILCDIGMPVI-HGGVRYNCRVFCLNRKILLIRPKMWLAND 119

Query: 121 SEFHEKRTFISGYSNDPIV-------------------------FRDIRLGILICEDIWK 155
             + E R F +      +                          F D  +    CE+++ 
Sbjct: 120 GNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFGDGYLQFLDTAVAAETCEELFT 179

Query: 156 NSNICKHLKKQGAEFLFSLNASPYYHN--KLKKRHEI---VTGQISHVHLPIIYVNQVGG 210
                  L   G E +   N S  +H   KL  R ++    T +   V+L   Y NQ G 
Sbjct: 180 PQAPHIDLALNGVEII--SNGSGSHHQLRKLNTRLDLIRSATHKCGGVYL---YANQRG- 233

Query: 211 QDELIFDGASFCFDG-------------QQQLAFQ--------------------MKHFS 237
                 DG    +DG               Q + Q                    +  F 
Sbjct: 234 -----CDGGRLYYDGCACIVVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFR 288

Query: 238 EQ----NFMTEWHYDQQLSQWNYMSDDSASTMYIPL-------QEEEADYNACVLSLRDY 286
           EQ      +       +L          +     PL       +EE A   AC   L DY
Sbjct: 289 EQASSKKRVPSVAVPFKLCP----PFSLSLVPSSPLKIRYHSPEEEIALGPAC--WLWDY 342

Query: 287 VQKNNFHKVIIGLSGGIDSALCAAI-------------------AVDA------------ 315
           ++++     ++ LSGG DS+  AAI                     DA            
Sbjct: 343 LRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVP 402

Query: 316 -----LGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPIHDLVNHFFSLMSQFL 370
                  K    T+ +  + +S ++   A   A  +G  +  + I  +V+   SL     
Sbjct: 403 TDSKEFAKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDGVVSAVLSLFQTLT 462

Query: 371 QEEP-----SGIVAEN-----IQSRIRGNILMALSN-----HSKA---MLLTTSNKSEIS 412
            + P      G  AEN     IQ+RIR  +   L++       K+   ++L ++N  E  
Sbjct: 463 GKRPRYKVDGGSNAENLALQNIQARIRMVLAFMLASLLPWVRGKSGFLLVLGSANVDEGL 522

Query: 413 VGYGTLYGDMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAE 472
            GY T Y   S   NP+  + K  +     W  ++    G   L EV         P+AE
Sbjct: 523 RGYLTKYDCSSADINPIGGISKQDLRSFLRWAATN---LGYPSLAEVE-----AAPPTAE 574

Query: 473 LRP-----HQTDQE 481
           L P      QTD+E
Sbjct: 575 LEPIRDDYSQTDEE 588


>gnl|CDD|163242 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase.  Members
           of this family are N-carbamoylputrescine amidase
           (3.5.1.53). Bacterial genes are designated AguB. The
           AguAB pathway replaces SpeB for conversion of agmatine
           to putrescine in two steps rather than one.
          Length = 279

 Score = 61.2 bits (149), Expect = 8e-10
 Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 24/238 (10%)

Query: 5   LKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGY---PPEDLVFKKS 61
           + +A  Q+     D+  NIA+A R   EA  +G  +IL  ELF   Y     ++  F  +
Sbjct: 1   VTVAALQMACS-DDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALA 59

Query: 62  FIQACSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDA-GNIIAVRDKINLPNY 120
                  AI   ++   + G  I V F  +      NS+ ++DA G+++ V  K ++P+ 
Sbjct: 60  QPVEGHPAIKRFQALAKELGVVIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDG 119

Query: 121 SEFHEKRTFISGYSNDPIVF-----RDIRLGILICEDIWKNSNICKHLKKQGAEFLF--- 172
             + EK  F  G +     F     R  R+G+ IC D W      + +   GAE LF   
Sbjct: 120 PGYQEKFYFRPGDTG----FKVWDTRYGRIGVGICWDQWF-PETARAMALMGAEVLFYPT 174

Query: 173 SLNASPYYHNKLKKRH--EIVTGQISHVHLPIIYVNQVG----GQDELIFDGASFCFD 224
           ++ + P+  +   + H   ++ G  +   +P++  N++G       E  F G+SF  D
Sbjct: 175 AIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSFIAD 232


>gnl|CDD|129369 TIGR00268, TIGR00268, conserved hypothetical protein TIGR00268.
           The N-terminal region of the model shows similarity to
           Argininosuccinate synthase proteins using PSI-blast and
           using the recognize protein identification server.
          Length = 252

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 283 LRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAAC 342
           LR+++++  F KV+I  SGG+DS+L AA+  DA     V  I +     SP+ LEDA   
Sbjct: 5   LRNFLKE--FKKVLIAYSGGVDSSLLAAVCSDAG--TEVLAITVVSPSISPRELEDAIII 60

Query: 343 AKALGCKYDVLPIHDLVNHF 362
           AK +G  ++ + I  ++N F
Sbjct: 61  AKEIGVNHEFVKIDKMINPF 80


>gnl|CDD|185554 PTZ00323, PTZ00323, NAD+ synthase; Provisional.
          Length = 294

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 53/229 (23%)

Query: 283 LRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDALGKEN---------VQTIMLPYKYTSP 333
           L +Y+++      +  +SGGIDSA+  A+   A+   N          Q I     ++S 
Sbjct: 37  LNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPI-----HSSA 91

Query: 334 QSLEDAAACAKALGCKYDVLPIHDLVNHFFSLMSQFLQEEPSGIVAENIQSRIRGNI--- 390
            +L       +A G     +   D       L S  L E+  GI         RG +   
Sbjct: 92  WALNRGRENIQACGATEVTV---DQTEIHTQLSS--LVEKAVGIKGGAFA---RGQLRSY 143

Query: 391 -----------LMALSNHSKAMLLTTSNKSEIS-VGYGTLYGDMSGGFNPLKDLYKTQVF 438
                      L++    + A+++ T N  E   +GY    GD       + DL+K++VF
Sbjct: 144 MRTPVAFYVAQLLS-QEGTPAVVMGTGNFDEDGYLGYFCKAGDGVVDVQLISDLHKSEVF 202

Query: 439 QLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPHQTDQESLP-PY 486
            +A           LG     +P + L+ +PSA+L   QTD++ L  PY
Sbjct: 203 LVARE---------LG-----VPENTLQAAPSADLWEGQTDEDELGFPY 237


>gnl|CDD|178348 PLN02747, PLN02747, N-carbamolyputrescine amidase.
          Length = 296

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 18/167 (10%)

Query: 17  GDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKKSFIQACSS-----AID 71
            D A N+ KA R   EA+ +G ++IL  ELF   Y  +    ++ F Q          I 
Sbjct: 18  DDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQ--AQREDFFQRAKPYEGHPTIA 75

Query: 72  TLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDA-GNIIAVRDKINLPNYSEFHEKRTFI 130
            ++    + G  I V F  +      NS+ I+DA G  + +  K ++P+   + EK  F 
Sbjct: 76  RMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFN 135

Query: 131 SGYSNDPIVFRDI-----RLGILICEDIWKNSNICKHLKKQGAEFLF 172
            G +     F+       ++G+ IC D W      + +  QGAE L 
Sbjct: 136 PGDTG----FKVFDTKFAKIGVAICWDQW-FPEAARAMVLQGAEVLL 177


>gnl|CDD|129461 TIGR00364, TIGR00364, exsB protein.  This protein family is
           represented by a single member in nearly every completed
           large (> 1000 genes) prokaryotic genome. In Rhizobium
           meliloti, a species in which the exo genes make
           succinoglycan, a symbiotically important
           exopolysaccharide, exsB is located nearby and affects
           succinoglycan levels, probably through polar effects on
           exsA expression or the same polycistronic mRNA. In
           Arthrobacter viscosus, the homologous gene is designated
           ALU1 and is associated with an aluminum tolerance
           phenotype. The function is unknown.
          Length = 201

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 296 IIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPI 355
           ++ LSGG DS  C AIA D      V  I   Y     + LE A   A+ALG ++ V+ +
Sbjct: 2   VVVLSGGQDSTTCLAIAKD--EGYEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDL 59

Query: 356 HDLVNHF 362
             L+   
Sbjct: 60  -SLLKQL 65


>gnl|CDD|179116 PRK00768, nadE, NAD synthetase; Reviewed.
          Length = 268

 Score = 44.4 bits (106), Expect = 8e-05
 Identities = 61/250 (24%), Positives = 96/250 (38%), Gaps = 85/250 (34%)

Query: 283 LRDYVQKNNFHKVIIGLSGGIDSALC---AAIAVDALGKENVQT------IMLPYKYTSP 333
           L+DY++K+    +++G+SGG DS L    A +AV+ L  E          + LPY     
Sbjct: 29  LKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGV--- 85

Query: 334 QSLEDAAACAKALGCKYDVLPIHDLVNHFFSLMSQFLQEEPSGIVAENIQSR-------- 385
           Q+  D      AL                      F+Q  P  ++  NI+          
Sbjct: 86  QA--DEDDAQDAL---------------------AFIQ--PDRVLTVNIKPAVDASVAAL 120

Query: 386 ----------IRGNI----LM----ALSNHSKAMLLTTSNKSEISVGYGTLYGDMSGG-- 425
                     ++GNI     M    A++  +  +++ T + +E   G+ T +GD  GG  
Sbjct: 121 EAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDHAAEAVTGFFTKFGD--GGAD 178

Query: 426 FNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSA---ELRPHQTDQES 482
             PL  L K Q   L +          LG      P  + EK P+A   + RP   D+ +
Sbjct: 179 ILPLFGLNKRQGRALLAA---------LGA-----PEHLYEKVPTADLEDDRPGLPDEVA 224

Query: 483 LP-PYPILDD 491
           L   Y  +DD
Sbjct: 225 LGVTYDQIDD 234


>gnl|CDD|178898 PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.
          Length = 346

 Score = 43.9 bits (105), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 10/70 (14%)

Query: 293 HKVIIGLSGGIDSALCAAIAVDALGKENV--------QTIMLPYKY-TSPQSLEDAAACA 343
            +V++G+SGG+DS++ AA+  +  G E +                   + + + DA   A
Sbjct: 1   KRVVVGMSGGVDSSVAAALLKEQ-GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVA 59

Query: 344 KALGCKYDVL 353
             LG  + V+
Sbjct: 60  DKLGIPHYVV 69


>gnl|CDD|148238 pfam06508, ExsB, ExsB.  This family includes putative
           transcriptional regulators from Bacteria and Archaea.
          Length = 137

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 294 KVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQS--LEDAAACAKALGCKYD 351
           K ++ LSGG+DS  C A A    G E      L + Y    S  LE A   AKALG ++ 
Sbjct: 1   KAVVLLSGGLDSTTCLAWAKKE-GYE---VYALTFDYGQRHSKELECAKKIAKALGVEHK 56

Query: 352 VLPI 355
           ++ +
Sbjct: 57  IVDL 60


>gnl|CDD|179167 PRK00919, PRK00919, GMP synthase subunit B; Validated.
          Length = 307

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 294 KVIIGLSGGIDSALCAAIAVDALG 317
           K II LSGG+DS++ A +A  A+G
Sbjct: 23  KAIIALSGGVDSSVAAVLAHRAIG 46


>gnl|CDD|178395 PLN02798, PLN02798, nitrilase.
          Length = 286

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 45/177 (25%)

Query: 3   KKLKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKKSF 62
             +++A+AQ+     D+A N A   R  +EA   G  L+   E F             SF
Sbjct: 9   SSVRVAVAQMTST-NDLAANFATCSRLAKEAAAAGAKLLFLPECF-------------SF 54

Query: 63  IQACSSAIDTLK-SDTHDG-----------GAGIVV---GFPR--QDQEGVLNS-VVILD 104
           I       ++L  ++  DG            +G+ +   GF     D   + N+ V+I D
Sbjct: 55  IGD--KDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDD 112

Query: 105 AGNIIAVRDKINL-----PNYSEFHEKRTFISGYSNDPIVFRDI---RLGILICEDI 153
           +G I +   KI+L     P      E      G     IV  D    RLG+ +C D+
Sbjct: 113 SGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPG---KTIVAVDSPVGRLGLTVCYDL 166


>gnl|CDD|178120 PLN02504, PLN02504, nitrilase.
          Length = 346

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 17/44 (38%), Positives = 22/44 (50%)

Query: 9  IAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYP 52
          + Q + V  D    + KA R   EA   G  L++F E FI GYP
Sbjct: 29 VVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYP 72


>gnl|CDD|162088 TIGR00884, guaA_Cterm, GMP synthase (glutamine-hydrolyzing),
           C-terminal domain or B subunit.  This protein of purine
           de novo biosynthesis is well-conserved. However, it
           appears to split into two separate polypeptide chains in
           most of the Archaea. This C-terminal region would be the
           larger subunit.
          Length = 311

 Score = 36.9 bits (86), Expect = 0.015
 Identities = 14/25 (56%), Positives = 19/25 (76%)

Query: 294 KVIIGLSGGIDSALCAAIAVDALGK 318
           KVII LSGG+DS++ A +A  A+G 
Sbjct: 18  KVIIALSGGVDSSVAAVLAHRAIGD 42


>gnl|CDD|161871 TIGR00420, trmU, tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase.
            tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (trmU, asuE, or mnmA) is involved in the biosynthesis of
           the modified nucleoside
           5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in
           the wobble position of some tRNAs. This enzyme appears
           not to occur in the Archaea.
          Length = 352

 Score = 36.6 bits (85), Expect = 0.020
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 294 KVIIGLSGGIDSALCAAI------AVDALGKEN-VQTIMLPYKY-TSPQSLEDAAACAKA 345
           KVI+GLSGG+DS++ A +       V  +  +N  +         TS + L DA A  + 
Sbjct: 2   KVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEK 61

Query: 346 LGCKYDVLP-IHDLVNHFFSLMSQFLQE 372
           LG   + +    +  N  F    Q  +E
Sbjct: 62  LGIPLEKVNFQKEYWNKVFEPFIQEYKE 89


>gnl|CDD|178842 PRK00074, guaA, GMP synthase; Reviewed.
          Length = 511

 Score = 36.2 bits (85), Expect = 0.023
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 294 KVIIGLSGGIDSALCAAIAVDALGK 318
           KVI+GLSGG+DS++ A +   A+G 
Sbjct: 217 KVILGLSGGVDSSVAAVLLHKAIGD 241


>gnl|CDD|173128 PRK14665, mnmA, tRNA-specific 2-thiouridylase MnmA; Provisional.
          Length = 360

 Score = 34.5 bits (79), Expect = 0.080
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 287 VQKNNFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYT-SPQSLEDAAACAKA 345
           ++KN   +V++G+SGG DS++ A + ++A G E        Y++  S + LEDA A A+ 
Sbjct: 2   MEKNK--RVLLGMSGGTDSSVAAMLLLEA-GYEVTGVTFRFYEFNGSTEYLEDARALAER 58

Query: 346 LGCK---YDV 352
           LG     YD 
Sbjct: 59  LGIGHITYDA 68


>gnl|CDD|178970 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.
          Length = 505

 Score = 33.7 bits (78), Expect = 0.11
 Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 46/204 (22%)

Query: 3   KKLKIAIAQLN--------PVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPE 54
             LK+A+ Q N        P    +   + K       A     DLI++ E   +  P  
Sbjct: 218 PALKVALVQGNIPQSLKWDP--AGLEATLQKYLDLSRPALGPA-DLIIWPE---TAIPF- 270

Query: 55  DLVFKKSFIQACSSAIDTLKSDTHDGGAGIVVGFPRQDQEG----VLNSVVILDAGNIIA 110
                +   QA   A+D L  +    G+ ++ G PR + +       NS+ +L    I+ 
Sbjct: 271 ---LLEDLPQAFLKALDDLAREK---GSALITGAPRAENKQGRYDYYNSIYVLGPYGILN 324

Query: 111 VRDKINL-------PNYSEFHEKRTF----ISGYS-----NDPIVFRDIRLGILIC-EDI 153
             DK +L       P  S       F    +  +S       P++ + ++L  LIC E I
Sbjct: 325 RYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGPYVQPPLLAKGLKLAPLICYEII 384

Query: 154 WKNSNICKHLKKQGAEFLFSLNAS 177
           +      +   +QGA+ L  LN S
Sbjct: 385 F--PEEVRANVRQGADLL--LNIS 404


>gnl|CDD|182963 PRK11101, glpA, sn-glycerol-3-phosphate dehydrogenase subunit A;
           Provisional.
          Length = 546

 Score = 33.8 bits (78), Expect = 0.11
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 46  LFISGYPPEDLVFKKSFIQACSSA-IDT 72
           LFI+  P +DL F+ +FI+AC  A I+ 
Sbjct: 90  LFIT-LPEDDLAFQATFIRACEEAGIEA 116


>gnl|CDD|147794 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
           This family consists of the N-terminal region of the
           prokaryotic fibronectin-binding protein. Fibronectin
           binding is considered to be an important virulence
           factor in streptococcal infections. Fibronectin is a
           dimeric glycoprotein that is present in a soluble form
           in plasma and extracellular fluids; it is also present
           in a fibrillar form on cell surfaces. Both the soluble
           and cellular forms of fibronectin may be incorporated
           into the extracellular tissue matrix. While fibronectin
           has critical roles in eukaryotic cellular processes,
           such as adhesion, migration and differentiation, it is
           also a substrate for the attachment of bacteria. The
           binding of pathogenic Streptococcus pyogenes and
           Staphylococcus aureus to epithelial cells via
           fibronectin facilitates their internalisation and
           systemic spread within the host.
          Length = 447

 Score = 33.0 bits (76), Expect = 0.20
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 175 NASPYY--HNKLKKRHEIVTGQISHVHLPIIYVNQV 208
           NA  YY  + KLK+  E V  QI      I Y+  V
Sbjct: 373 NAQKYYKKYKKLKRAVEAVEEQIEETKEEIEYLESV 408


>gnl|CDD|163136 TIGR03104, trio_amidotrans, asparagine synthase family
           amidotransferase.  Members of this protein family are
           closely related to several isoforms of asparagine
           synthetase (glutamine amidotransferase) and typically
           have been given this name in genome annotation to date.
           Each is part of a conserved three-gene cassette sparsely
           distributed across at least twenty different species
           known so far, including alpha, beta, and gamma
           Proteobacteria, Mycobacterium, and Prosthecochloris,
           which is a member of the Chlorobi. The other two members
           of the cassette are a probable protease and a member of
           the GNAT family of acetyltransferases.
          Length = 589

 Score = 30.4 bits (69), Expect = 1.4
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 273 EADYNACVL-SLRDYVQKNNFHKVIIG--LSGGIDSALCAAIAVDALGKENVQT 323
           EAD+   +L +LR  V++     V +G  LSGG+DS+L   +  +A G + ++T
Sbjct: 238 EADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEA-GVDGLRT 290


>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing).
          Length = 578

 Score = 30.1 bits (68), Expect = 1.6
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 13/68 (19%)

Query: 251 LSQW---NYMSDDSASTMYIPLQEEEADYNACVLSLRDYVQKNNFHKVIIG--LSGGIDS 305
             +W    + S+   ST Y PL   EA            V K     V  G  LSGG+DS
Sbjct: 187 FRRWYNPPWFSESIPSTPYDPLVLREA--------FEKAVIKRLMTDVPFGVLLSGGLDS 238

Query: 306 ALCAAIAV 313
           +L A+IA 
Sbjct: 239 SLVASIAA 246


>gnl|CDD|162406 TIGR01536, asn_synth_AEB, asparagine synthase
           (glutamine-hydrolyzing).  This model describes the
           glutamine-hydrolysing asparagine synthase. A poorly
           conserved C-terminal extension was removed from the
           model. Bacterial members of the family tend to have a
           long, poorly conserved insert lacking from archaeal and
           eukaryotic sequences. Multiple isozymes have been
           demonstrated, such as in Bacillus subtilis. Long-branch
           members of the phylogenetic tree (which typically were
           also second or third candidate members from their
           genomes) were removed from the seed alignment and score
           below trusted cutoff.
          Length = 467

 Score = 29.6 bits (67), Expect = 2.2
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 283 LRDYVQKNNFHKVIIG--LSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLED-- 338
           L D V++     V +G  LSGG+DS+L AAIA     +  V T  +   +      ++  
Sbjct: 242 LEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSI--GFEGSPDFDESP 299

Query: 339 -AAACAKALGCKYDVLPIH--DLVNHFFSLMSQFLQEEP 374
            A   A  LG ++  +     + ++    ++  +  E+P
Sbjct: 300 YARKVADHLGTEHHEVLFSVEEGLDALPEVI--YHLEDP 336


>gnl|CDD|181851 PRK09431, asnB, asparagine synthetase B; Provisional.
          Length = 554

 Score = 29.5 bits (67), Expect = 2.6
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 269 LQEEEADYNACVLSLRDYVQKNNFHKVIIG--LSGGIDSALCAAIA 312
           +++   D N    +L   V+K     V  G  LSGG+DS+L +AIA
Sbjct: 202 VKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIA 247


>gnl|CDD|177376 PHA02541, 23, major capsid protein; Provisional.
          Length = 518

 Score = 29.0 bits (65), Expect = 3.4
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%)

Query: 479 DQESLPPYPILD----DIIKRIVENEESFINNDQEYNDETV 515
           + E LP   I D     ++ +I+EN+E  I  +  Y DE +
Sbjct: 15  EHEGLPE--IADASKQAVVAKILENQEKDIREEPVYRDEKI 53


>gnl|CDD|115704 pfam07068, Gp23, Major capsid protein Gp23.  This family contains a
           number of major capsid Gp23 proteins approximately 500
           residues long, from T4-like bacteriophages.
          Length = 493

 Score = 28.8 bits (64), Expect = 3.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 492 IIKRIVENEESFINNDQEYNDETV 515
           II +I EN+E       EY DE +
Sbjct: 24  IIAKIFENQEKDFEVSPEYKDEKI 47


>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase.
          Length = 405

 Score = 28.7 bits (64), Expect = 3.8
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 99  SVVILDAGNIIAVRDKINLPNYSEFHEKRTFISGYSNDPIVFRDI--RLGILIC 150
           +VVI + GNII    K ++P   +F+E   ++ G +  P VF     ++ + IC
Sbjct: 194 AVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHP-VFETAFGKIAVNIC 246


>gnl|CDD|173127 PRK14664, PRK14664, tRNA-specific 2-thiouridylase MnmA;
           Provisional.
          Length = 362

 Score = 28.8 bits (64), Expect = 4.1
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 12/80 (15%)

Query: 289 KNNFHKVIIGLSGGIDS-ALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALG 347
           K +  +V++G+SGGIDS A C  + +   G E V   M  +    PQ   DA   A  +G
Sbjct: 2   KESKKRVLVGMSGGIDSTATC--LMLQEQGYEIVGVTMRVWG-DEPQ---DARELAARMG 55

Query: 348 CKYDV----LPIHD-LVNHF 362
            ++ V    +P  D +V +F
Sbjct: 56  IEHYVADERVPFKDTIVKNF 75


>gnl|CDD|131508 TIGR02455, TreS_stutzeri, trehalose synthase, Pseudomonas stutzeri
           type.  Trehalose synthase catalyzes a one-step
           conversion of maltose to trehalose. This is an
           alternative to the OtsAB and TreYZ pathways. This family
           includes a characterized example from Pseudomonas
           stutzeri plus very closely related sequences from other
           Pseudomonads. Cutoff scores are set to find a more
           distantly related sequence from Desulfovibrio vulgaris,
           likely to be functionally equivalent, between trusted
           and noise limits.
          Length = 688

 Score = 28.4 bits (63), Expect = 4.9
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 14/117 (11%)

Query: 163 LKKQGAEFLFSLNASPYYHNKLKKRHEIVTGQISHVHLPIIYVNQVGGQDELIFDGASF- 221
           +   GA+  +     P YH      H ++TG    + L +  ++  G       D AS  
Sbjct: 349 MSHGGADLSYDFITRPAYH------HALLTGDTEFLRLMLKEMHAFG------IDPASLI 396

Query: 222 -CFDGQQQLAFQMKHFSEQNFMTEWHYDQQLSQWNYMSDDSASTMYIPLQEEEADYN 277
                  +L  ++ HF   +    +HY  Q     ++ +     +Y  L  E A YN
Sbjct: 397 HALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYN 453


>gnl|CDD|163334 TIGR03573, WbuX, N-acetyl sugar amidotransferase.  This enzyme has
           been implicated in the formation of the acetamido moiety
           (sugar-NC(=NH)CH3) which is found on some
           exopolysaccharides and is positively charged at neutral
           pH. The reaction involves ligation of ammonia with a
           sugar N-acetyl group, displacing water. In E. coli (O145
           strain) and Pseudomonas aeruginosa (O12 strain) this
           gene is known as wbuX and ifnA respectively and likely
           acts on sialic acid. In Campylobacter jejuni, the gene
           is known as pseA and acts on pseudaminic acid in the
           process of flagellin glycosylation. In other Pseudomonas
           strains and various organisms it is unclear what the
           identity of the sugar substrate is, and in fact, the
           phylogenetic tree of this family sports a considerably
           deep branching suggestive of possible major differences
           in substrate structure. Nevertheless, the family is
           characterized by a conserved tetracysteine motif
           (CxxC.....[GN]xCxxC) possibly indicative of a metal
           binding site, as well as an invariable contextual
           association with homologs of the HisH and HisF proteins
           known as WbuY and WbuZ, respectively. These two proteins
           are believed to supply the enzyme with ammonium by
           hydrolysis of glutamine and delivery through an ammonium
           conduit.
          Length = 343

 Score = 28.0 bits (63), Expect = 5.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 290 NNFHKVIIGLSGGIDSALCAAIAVDALG 317
              +  IIG+SGG DS   A +    LG
Sbjct: 57  GGRYDCIIGVSGGKDSTYQAHVLKKKLG 84


>gnl|CDD|184719 PRK14511, PRK14511, maltooligosyl trehalose synthase; Provisional.
          Length = 879

 Score = 28.0 bits (63), Expect = 5.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 420 GDMSGGFNPLKDLYKTQVFQLASWR 444
           G    G + L  L + Q ++LASWR
Sbjct: 226 GRKGDGRSRLDRLLERQHYRLASWR 250


>gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional.
          Length = 448

 Score = 27.7 bits (62), Expect = 7.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 484 PPYPILDDIIKRIVENEESF 503
           PP PI ++I K+I+ +EE  
Sbjct: 379 PPAPIAEEIKKKIIGDEEVI 398


>gnl|CDD|177981 PLN02347, PLN02347, GMP synthetase.
          Length = 536

 Score = 27.7 bits (62), Expect = 7.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 295 VIIGLSGGIDSALCAAIAVDALG 317
           VI  LSGG+DS + A +   A+G
Sbjct: 232 VICALSGGVDSTVAATLVHKAIG 254


>gnl|CDD|177868 PLN02222, PLN02222, phosphoinositide phospholipase C 2.
          Length = 581

 Score = 27.7 bits (61), Expect = 7.9
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 491 DIIKRIVENEESFINNDQEYNDETVRYVEHLLYGSEYKRRQAPVGTKITAKSF 543
           D ++R+  +EE      ++Y  + VR+ +H L       R  P GT++T+ ++
Sbjct: 340 DKVRRLSLSEEQLEKAAEKYAKQIVRFTQHNLL------RIYPKGTRVTSSNY 386


>gnl|CDD|162182 TIGR01061, parC_Gpos, DNA topoisomerase IV, A subunit,
           Gram-positive.  Operationally, topoisomerase IV is a
           type II topoisomerase required for the decatenation of
           chromosome segregation. Not every bacterium has both a
           topo II and a topo IV. The topo IV families of the
           Gram-positive bacteria and the Gram-negative bacteria
           appear not to represent a single clade among the type II
           topoisomerases, and are represented by separate models
           for this reason.
          Length = 738

 Score = 27.8 bits (62), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 174 LNASPYYHNKLKKRHEIVTGQISHVHL 200
           +N S Y   K  KR EIV G I  + +
Sbjct: 355 INRSKYELEKASKRLEIVEGLIKAISI 381


>gnl|CDD|161895 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit,
           non-spirochete bacterial.  Every known example of the
           phenylalanyl-tRNA synthetase, except the monomeric form
           of mitochondrial, is an alpha 2 beta 2 heterotetramer.
           The beta subunits break into two subfamilies that are
           considerably different in sequence, length, and pattern
           of gaps. This model represents the subfamily that
           includes the beta subunit from Bacteria other than
           spirochetes, as well as a chloroplast-encoded form from
           Porphyra purpurea. The chloroplast-derived sequence is
           considerably shorter at the amino end, however.
          Length = 798

 Score = 27.6 bits (62), Expect = 8.2
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 115 INLPNYSEFHEKRTFISGYSNDPIVFRDIRLGILICEDIWKNSNICKHLKKQGAEFLFSL 174
           ++L    E  +K       S  P V RDI    L+ +D+   + I K +KK G E L  +
Sbjct: 686 LDLDRLLESLKKVPKYRPISKFPAVTRDI--SFLVPKDV-PANEIIKLIKKSGLELLEEV 742

Query: 175 NA-SPYYHNKLKKRHEIVT 192
                Y    + +  + + 
Sbjct: 743 ELFDVYEGKNIGEGKKSLA 761


>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein;
           Provisional.
          Length = 586

 Score = 27.8 bits (62), Expect = 8.9
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 268 PLQEEEADYNACVLSLRDYVQKNNFHKVIIG--LSGGIDSALCAAIAVDALGKEN 320
           P+   E D      +L   V+K     V  G  LSGG+DS++ AAI    +    
Sbjct: 211 PIPTGEIDLEEIREALEAAVRKRLMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGE 265


>gnl|CDD|183890 PRK13200, psaA, photosystem I P700 chlorophyll a apoprotein A1;
           Provisional.
          Length = 766

 Score = 27.4 bits (61), Expect = 9.5
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 413 VGYGTLYGDMSGGFNPLKDLYKTQVFQLASWRNSHGITS 451
           VG   L GD+ GGF+ ++    + +FQL  WR   GIT+
Sbjct: 121 VGQEILNGDVGGGFHGIQ--ITSGLFQL--WRAW-GITN 154


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0731    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 9,310,517
Number of extensions: 612915
Number of successful extensions: 1228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1209
Number of HSP's successfully gapped: 49
Length of query: 562
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 464
Effective length of database: 3,876,889
Effective search space: 1798876496
Effective search space used: 1798876496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)