BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62] (562 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 562 Score = 1171 bits (3029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 562/562 (100%), Positives = 562/562 (100%) Query: 1 MLKKLKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKK 60 MLKKLKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKK Sbjct: 1 MLKKLKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKK 60 Query: 61 SFIQACSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAGNIIAVRDKINLPNY 120 SFIQACSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAGNIIAVRDKINLPNY Sbjct: 61 SFIQACSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAGNIIAVRDKINLPNY 120 Query: 121 SEFHEKRTFISGYSNDPIVFRDIRLGILICEDIWKNSNICKHLKKQGAEFLFSLNASPYY 180 SEFHEKRTFISGYSNDPIVFRDIRLGILICEDIWKNSNICKHLKKQGAEFLFSLNASPYY Sbjct: 121 SEFHEKRTFISGYSNDPIVFRDIRLGILICEDIWKNSNICKHLKKQGAEFLFSLNASPYY 180 Query: 181 HNKLKKRHEIVTGQISHVHLPIIYVNQVGGQDELIFDGASFCFDGQQQLAFQMKHFSEQN 240 HNKLKKRHEIVTGQISHVHLPIIYVNQVGGQDELIFDGASFCFDGQQQLAFQMKHFSEQN Sbjct: 181 HNKLKKRHEIVTGQISHVHLPIIYVNQVGGQDELIFDGASFCFDGQQQLAFQMKHFSEQN 240 Query: 241 FMTEWHYDQQLSQWNYMSDDSASTMYIPLQEEEADYNACVLSLRDYVQKNNFHKVIIGLS 300 FMTEWHYDQQLSQWNYMSDDSASTMYIPLQEEEADYNACVLSLRDYVQKNNFHKVIIGLS Sbjct: 241 FMTEWHYDQQLSQWNYMSDDSASTMYIPLQEEEADYNACVLSLRDYVQKNNFHKVIIGLS 300 Query: 301 GGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPIHDLVN 360 GGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPIHDLVN Sbjct: 301 GGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPIHDLVN 360 Query: 361 HFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYG 420 HFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYG Sbjct: 361 HFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYG 420 Query: 421 DMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPHQTDQ 480 DMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPHQTDQ Sbjct: 421 DMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPHQTDQ 480 Query: 481 ESLPPYPILDDIIKRIVENEESFINNDQEYNDETVRYVEHLLYGSEYKRRQAPVGTKITA 540 ESLPPYPILDDIIKRIVENEESFINNDQEYNDETVRYVEHLLYGSEYKRRQAPVGTKITA Sbjct: 481 ESLPPYPILDDIIKRIVENEESFINNDQEYNDETVRYVEHLLYGSEYKRRQAPVGTKITA 540 Query: 541 KSFGRDRLYPISNKFRDHISEE 562 KSFGRDRLYPISNKFRDHISEE Sbjct: 541 KSFGRDRLYPISNKFRDHISEE 562 >gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 520 Score = 28.1 bits (61), Expect = 0.38, Method: Compositional matrix adjust. Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 294 KVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKA 345 +VI +SGG+DS + A + +A+G N+ +++ + + +E+ + K Sbjct: 224 RVICAVSGGVDSTVAAFLIYEAIGI-NLTCVLVDHGFMRKNEVENIISLFKG 274 >gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 27.7 bits (60), Expect = 0.57, Method: Compositional matrix adjust. Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 294 KVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYK-YTSPQSLEDAAACAKALGCKYDV 352 +V++ +SGG+DS++ AA+ L ++ I + + Y S ++ + +C YD Sbjct: 22 RVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDA 76 Query: 353 LPIHDLVN 360 + D +N Sbjct: 77 RRVCDTIN 84 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust. Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 376 GIVAENIQSRIRGNILMALSNHSKAML 402 I N + I+GN+ + L NHS+AML Sbjct: 868 AIDVANSLTEIQGNVGVTLENHSQAML 894 >gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 25.8 bits (55), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 8/89 (8%) Query: 226 QQQLAFQMKHFSEQNFMTEWHYDQQLSQWNYMSDDSASTMYIPLQEEEADY-NACVLSLR 284 ++ + F+ +TE ++D S W + + + + + + NA + Sbjct: 157 RRMIDFERLMRGRNRLLTEGYFD---SSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213 Query: 285 DYVQKNNFHKVIIGLSGGIDS----ALCA 309 +YVQK NF + + L+G +D + CA Sbjct: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 >gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2 [Candidatus Liberibacter asiaticus str. psy62] Length = 362 Score = 24.6 bits (52), Expect = 4.0, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Query: 494 KRIVENEESFINNDQEYNDETVR--YVEH 520 KRI++ F+N + E N E +R Y E+ Sbjct: 328 KRIIQGLSDFLNKENEVNFENIRGSYTEY 356 >gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus str. psy62] Length = 297 Score = 24.3 bits (51), Expect = 5.1, Method: Compositional matrix adjust. Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Query: 342 CAKALGCKYDVLPIHDLVNHFFSLMSQFLQEEPSGIVAENIQSRIRGNILMA 393 A ++ C +LP+ +++H S + + ++P ++ ++R R N+L+A Sbjct: 36 LADSIACDI-ILPLEGMIDHHRSKILSIIADKPIDLIIHRHENR-RKNLLIA 85 >gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 622 Score = 23.9 bits (50), Expect = 7.1, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 17/34 (50%) Query: 524 GSEYKRRQAPVGTKITAKSFGRDRLYPISNKFRD 557 GS Y QAP K + G DR + I+ FRD Sbjct: 189 GSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRD 222 >gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 702 Score = 23.9 bits (50), Expect = 7.4, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 13/73 (17%) Query: 79 DGGAGIVVGFPRQDQEGVLNSVVI---LDAGNIIAVRDKINLPNYSEFHEKRTFISGYSN 135 DGGA IV G NS V+ L+ RD+ NLPN S E + + Sbjct: 313 DGGAAIVQG----------NSRVVAARLEDALHFWKRDQNNLPNLSSLKESALKFNLDLS 362 Query: 136 DPIVFRDIRLGIL 148 P+ R RL +L Sbjct: 363 KPLDQRMARLDML 375 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.136 0.398 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 374,513 Number of Sequences: 1233 Number of extensions: 16291 Number of successful extensions: 65 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 15 length of query: 562 length of database: 328,796 effective HSP length: 79 effective length of query: 483 effective length of database: 231,389 effective search space: 111760887 effective search space used: 111760887 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 41 (20.4 bits)