BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus
Liberibacter asiaticus str. psy62]
         (562 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 562

 Score = 1171 bits (3029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/562 (100%), Positives = 562/562 (100%)

Query: 1   MLKKLKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKK 60
           MLKKLKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKK
Sbjct: 1   MLKKLKIAIAQLNPVVGDIAGNIAKARRAREEANRQGMDLILFTELFISGYPPEDLVFKK 60

Query: 61  SFIQACSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAGNIIAVRDKINLPNY 120
           SFIQACSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAGNIIAVRDKINLPNY
Sbjct: 61  SFIQACSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAGNIIAVRDKINLPNY 120

Query: 121 SEFHEKRTFISGYSNDPIVFRDIRLGILICEDIWKNSNICKHLKKQGAEFLFSLNASPYY 180
           SEFHEKRTFISGYSNDPIVFRDIRLGILICEDIWKNSNICKHLKKQGAEFLFSLNASPYY
Sbjct: 121 SEFHEKRTFISGYSNDPIVFRDIRLGILICEDIWKNSNICKHLKKQGAEFLFSLNASPYY 180

Query: 181 HNKLKKRHEIVTGQISHVHLPIIYVNQVGGQDELIFDGASFCFDGQQQLAFQMKHFSEQN 240
           HNKLKKRHEIVTGQISHVHLPIIYVNQVGGQDELIFDGASFCFDGQQQLAFQMKHFSEQN
Sbjct: 181 HNKLKKRHEIVTGQISHVHLPIIYVNQVGGQDELIFDGASFCFDGQQQLAFQMKHFSEQN 240

Query: 241 FMTEWHYDQQLSQWNYMSDDSASTMYIPLQEEEADYNACVLSLRDYVQKNNFHKVIIGLS 300
           FMTEWHYDQQLSQWNYMSDDSASTMYIPLQEEEADYNACVLSLRDYVQKNNFHKVIIGLS
Sbjct: 241 FMTEWHYDQQLSQWNYMSDDSASTMYIPLQEEEADYNACVLSLRDYVQKNNFHKVIIGLS 300

Query: 301 GGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPIHDLVN 360
           GGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPIHDLVN
Sbjct: 301 GGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYDVLPIHDLVN 360

Query: 361 HFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYG 420
           HFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYG
Sbjct: 361 HFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYG 420

Query: 421 DMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPHQTDQ 480
           DMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPHQTDQ
Sbjct: 421 DMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPHQTDQ 480

Query: 481 ESLPPYPILDDIIKRIVENEESFINNDQEYNDETVRYVEHLLYGSEYKRRQAPVGTKITA 540
           ESLPPYPILDDIIKRIVENEESFINNDQEYNDETVRYVEHLLYGSEYKRRQAPVGTKITA
Sbjct: 481 ESLPPYPILDDIIKRIVENEESFINNDQEYNDETVRYVEHLLYGSEYKRRQAPVGTKITA 540

Query: 541 KSFGRDRLYPISNKFRDHISEE 562
           KSFGRDRLYPISNKFRDHISEE
Sbjct: 541 KSFGRDRLYPISNKFRDHISEE 562


>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 520

 Score = 28.1 bits (61), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 294 KVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKA 345
           +VI  +SGG+DS + A +  +A+G  N+  +++ + +     +E+  +  K 
Sbjct: 224 RVICAVSGGVDSTVAAFLIYEAIGI-NLTCVLVDHGFMRKNEVENIISLFKG 274


>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score = 27.7 bits (60), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 294 KVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYK-YTSPQSLEDAAACAKALGCKYDV 352
           +V++ +SGG+DS++ AA+    L ++    I +  + Y S ++ +   +C       YD 
Sbjct: 22  RVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDA 76

Query: 353 LPIHDLVN 360
             + D +N
Sbjct: 77  RRVCDTIN 84


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 1828

 Score = 26.2 bits (56), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 376 GIVAENIQSRIRGNILMALSNHSKAML 402
            I   N  + I+GN+ + L NHS+AML
Sbjct: 868 AIDVANSLTEIQGNVGVTLENHSQAML 894


>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 375

 Score = 25.8 bits (55), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 226 QQQLAFQMKHFSEQNFMTEWHYDQQLSQWNYMSDDSASTMYIPLQEEEADY-NACVLSLR 284
           ++ + F+         +TE ++D   S W    +   + + + +     +  NA    + 
Sbjct: 157 RRMIDFERLMRGRNRLLTEGYFD---SSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213

Query: 285 DYVQKNNFHKVIIGLSGGIDS----ALCA 309
           +YVQK NF  + + L+G +D     + CA
Sbjct: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCA 242


>gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 362

 Score = 24.6 bits (52), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 494 KRIVENEESFINNDQEYNDETVR--YVEH 520
           KRI++    F+N + E N E +R  Y E+
Sbjct: 328 KRIIQGLSDFLNKENEVNFENIRGSYTEY 356


>gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 297

 Score = 24.3 bits (51), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 342 CAKALGCKYDVLPIHDLVNHFFSLMSQFLQEEPSGIVAENIQSRIRGNILMA 393
            A ++ C   +LP+  +++H  S +   + ++P  ++    ++R R N+L+A
Sbjct: 36  LADSIACDI-ILPLEGMIDHHRSKILSIIADKPIDLIIHRHENR-RKNLLIA 85


>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 622

 Score = 23.9 bits (50), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 524 GSEYKRRQAPVGTKITAKSFGRDRLYPISNKFRD 557
           GS Y   QAP   K    + G DR + I+  FRD
Sbjct: 189 GSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRD 222


>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 702

 Score = 23.9 bits (50), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 79  DGGAGIVVGFPRQDQEGVLNSVVI---LDAGNIIAVRDKINLPNYSEFHEKRTFISGYSN 135
           DGGA IV G          NS V+   L+       RD+ NLPN S   E     +   +
Sbjct: 313 DGGAAIVQG----------NSRVVAARLEDALHFWKRDQNNLPNLSSLKESALKFNLDLS 362

Query: 136 DPIVFRDIRLGIL 148
            P+  R  RL +L
Sbjct: 363 KPLDQRMARLDML 375


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,513
Number of Sequences: 1233
Number of extensions: 16291
Number of successful extensions: 65
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 15
length of query: 562
length of database: 328,796
effective HSP length: 79
effective length of query: 483
effective length of database: 231,389
effective search space: 111760887
effective search space used: 111760887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)