HHsearch alignment for GI: 254781000 and conserved domain: COG2263
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=99.36 E-value=3.5e-11 Score=92.11 Aligned_cols=130 Identities=22% Similarity=0.333 Sum_probs=95.0
Q ss_pred HHHHHHHHHEEECCCCCC-CEEEEECCCCCHHHHHHHH-CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
Q ss_conf 787755442011147788-3388602464235888850-68569984475889999999788608996499976899998
Q gi|254781000|r 193 GINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 (371)
Q Consensus 193 ~~~~~l~~~v~~~~~~~~-~~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~ 270 (371)
T Consensus 29 ~~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~ 106 (198)
T COG2263 29 PLAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR 106 (198)
T ss_pred HHHHHHHHHHH-HCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-HCCCEEEEECCHHHCC
T ss_conf 89999999998-738847888888278847889999862971799993698999999988886-0884699982101147
Q ss_pred HHHHHCCCCCCCCCCHHCCCCCCEEEECCC----CCCHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHHH--CCCCEEEE
Q ss_conf 988623322223210101478779998697----0263489999985399489992998999886-9984--26967999
Q gi|254781000|r 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGMVQAYPHILYISCNPDSLCRD-LSIL--STTHTIER 343 (371)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~d~vilDPP----R~G~~~~~~~~~~~~~~ivYVSCnp~TlarD-~~~l--~~gy~i~~ 343 (371)
T Consensus 107 -------------------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~--~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 107 -------------------GKFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAG--SRDFVEKFAADLGGTVTH 165 (198)
T ss_pred -------------------CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCC--CHHHHHHHHHHCCCEEEE
T ss_conf -------------------76666997899732213688899999997401478740166--079999998854970899
Q ss_pred EE
Q ss_conf 99
Q gi|254781000|r 344 LA 345 (371)
Q Consensus 344 ~~ 345 (371)
T Consensus 166 ~~ 167 (198)
T COG2263 166 IE 167 (198)
T ss_pred EE
T ss_conf 99