HHsearch alignment for GI: 254781000 and conserved domain: COG2265
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=574.97 Aligned_cols=340 Identities=30% Similarity=0.383 Sum_probs=285.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCCCCEEEEEEEEEEECCE-EEEEEECCCCCCEEECCCC
Q ss_conf 667666598999999999999998651887----76302898768226899999976891-6999982899737975637
Q gi|254781000|r 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWHDGDD-LYHIMFDQQTKERMRIDYF 76 (371)
Q Consensus 2 ~~~l~~~~Y~~QL~~K~~~v~~~l~r~~~~----~~~i~~s~~~~YRnr~~l~v~~~~~~-~~~g~~~~~s~~iv~i~~C 76 (371)
T Consensus 77 gC~lqhl~y~~QL~~K~~~l~~~l~~~~~~~~~~~~~~~~~~~~~yR~ka~~~v~~~~~~~l~~Gf~~~~s~~iv~i~~C 156 (432)
T COG2265 77 GCQLQHLSYEAQLEFKREQLKELLKRIGGSEVEIDPTVGMSPPWGYRNRARFSVRGSGKGQLLAGFFRQGSHEIVDIDEC 156 (432)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCC
T ss_conf 64135789799999999999999987567876511356788774743069999898258737887440488760024147
Q ss_pred CCCCHHHHHHHHHHHHHHHHCC---CC----CCCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 4588899999999998644088---53----3425787889804994999997377789558999999997532134168
Q gi|254781000|r 77 MPGSLLINALMIEMMATIRLEP---LL----RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 (371)
Q Consensus 77 ~i~~~~i~~~~~~l~~~~~~~~---~l----~~~l~~i~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 149 (371)
T Consensus 157 ~v~~~~~~~il~~l~~~l~~~~~~~y~~~~~~g~l~~~~~~~g~--~~~i~~v~~~--~~~~~~~~~~~~~~~~~~~~i~ 232 (432)
T COG2265 157 PVFPPRSNEILPLLRELLAKLGLPPYNEKKKKGILRLIVLREGQ--EVMVRLVTKH--LPELEQALRELLEAFPEIKGIV 232 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEEEECCCC--EEEEEEEECC--CHHHHHHHHHHHHHCCCCEEEE
T ss_conf 64387699999999999997167744211206459999942773--6999997066--3557889999998411130478
Q ss_pred EEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCHHHHCCCHHHHHHHHHHEEECCCCCC-CEEEEECCCCCHHHHHHH
Q ss_conf 9725379828960566414899967912799976413312357787755442011147788-338860246423588885
Q gi|254781000|r 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLA 228 (371)
Q Consensus 150 ~~~~~~~~~~~~~g~~~~~e~l~~~~~~~~f~i~p~sFfQ~N~~~~~~l~~~v~~~~~~~~-~~vlDLycG~G~fsl~La 228 (371)
T Consensus 233 ~~i~~~~~~~i~g~~~~~~~~~~~i~e~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA 312 (432)
T COG2265 233 QNINRAKTNVIEGDEEITLYGLESIREGVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLA 312 (432)
T ss_pred EEECCCCCCEEECCCCEEEECCCCCCCCEEEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHC
T ss_conf 99517887458657423660553442563887579974133999999999999999743699779993558870135531
Q ss_pred HCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHHHHH
Q ss_conf 06856998447588999999978860899649997689999898862332222321010147877999869702634899
Q gi|254781000|r 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 (371)
Q Consensus 229 ~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~ 308 (371)
T Consensus 313 ~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-------------~~~~~d~VvvDPPR~G~~~~~ 379 (432)
T COG2265 313 KRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-------------EGYKPDVVVVDPPRAGADREV 379 (432)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHC-------------CCCCCCEEEECCCCCCCCHHH
T ss_conf 2465799996489999999999997398877999586888865100-------------257999899899999999899
Q ss_pred HHHHH--CCCCEEEEECCHHHHHHHHHHHCC-CCEEEEEEEEECCCCCCCEEE
Q ss_conf 99985--399489992998999886998426-967999999717989872489
Q gi|254781000|r 309 VGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 (371)
Q Consensus 309 ~~~~~--~~~~ivYVSCnp~TlarD~~~l~~-gy~i~~~~~~D~FP~T~HvE~ 358 (371)
T Consensus 380 lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~~gy~i~~v~~~DmFP~T~HvE~ 432 (432)
T COG2265 380 LKQLAKLKPKRIVYVSCNPATLARDLAILASTGYEIERVQPFDMFPHTHHVEA 432 (432)
T ss_pred HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCC
T ss_conf 99998558986899976878889899999857904878766711799665669