HHsearch alignment for GI: 254781000 and conserved domain: COG2518
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].
Probab=98.02 E-value=1.2e-05 Score=55.96 Aligned_cols=84 Identities=25% Similarity=0.267 Sum_probs=67.5
Q ss_pred HHHHEEECCCCCC-CEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHC
Q ss_conf 5442011147788-338860246423588885068569984475889999999788608996499976899998988623
Q gi|254781000|r 198 MLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 (371)
Q Consensus 198 l~~~v~~~~~~~~-~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~ 276 (371)
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~----- 134 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP----- 134 (209)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-----
T ss_conf 999999974899998688877783099999999748499999719999999999997698734999788556887-----
Q ss_pred CCCCCCCCCHHCCCCCCEEEE
Q ss_conf 322223210101478779998
Q gi|254781000|r 277 REFNRLKDIDIHSYRFKTIFV 297 (371)
Q Consensus 277 ~~~~~~~~~~~~~~~~d~vil 297 (371)
T Consensus 135 -----------~~aPyD~I~V 144 (209)
T COG2518 135 -----------EEAPYDRIIV 144 (209)
T ss_pred -----------CCCCCCEEEE
T ss_conf -----------7798478999