HHsearch alignment for GI: 254781000 and conserved domain: KOG1122

Probab=97.19  E-value=0.0039  Score=39.68  Aligned_cols=84  Identities=17%  Similarity=0.282  Sum_probs=67.0

Q ss_pred             CCCCC-CEEEEECCCCCHHHHHHHH---CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCC
Q ss_conf             47788-3388602464235888850---6856998447588999999978860899649997689999898862332222
Q gi|254781000|r  206 TKGIQ-GDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR  281 (371)
Q Consensus       206 ~~~~~-~~vlDLycG~G~fsl~La~---~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~  281 (371)
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~--------  308 (460)
T KOG1122         237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE--------  308 (460)
T ss_pred             CCCCCCCEECCHHCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC--------
T ss_conf             079988711212107995077899987277469961354377999998899748774489736763255333--------


Q ss_pred             CCCCHHCCCCCCEEEECCCCCC
Q ss_conf             3210101478779998697026
Q gi|254781000|r  282 LKDIDIHSYRFKTIFVDPPRSG  303 (371)
Q Consensus       282 ~~~~~~~~~~~d~vilDPPR~G  303 (371)
T Consensus       309 -----~~-~~fDRVLLDAPCSG  324 (460)
T KOG1122         309 -----FP-GSFDRVLLDAPCSG  324 (460)
T ss_pred             -----CC-CCCCEEEECCCCCC
T ss_conf             -----67-64231453487777