HHsearch alignment for GI: 254781000 and conserved domain: KOG1253

Probab=96.92  E-value=0.0021  Score=41.45  Aligned_cols=107  Identities=22%  Similarity=0.254  Sum_probs=76.7

Q ss_pred             CCEEEEECCCCCHHHHHHHH---CCCEEEEECCCHHHHHHHHHHHHHCCCCC-EEEEECCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             83388602464235888850---68569984475889999999788608996-499976899998988623322223210
Q gi|254781000|r  210 QGDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDI  285 (371)
Q Consensus       210 ~~~vlDLycG~G~fsl~La~---~~~~V~gvE~~~~ai~~A~~Na~~N~i~n-~~f~~~~a~~~~~~~~~~~~~~~~~~~  285 (371)
T Consensus       110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~---------~-  179 (525)
T KOG1253         110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP---------M-  179 (525)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCC---------C-
T ss_conf             500898764551788899887042453103678777889998665506732211244102778987564---------5-


Q ss_pred             HHCCCCCCEEEECCCCCCHHHHHHHH-HHCCC--CEEEEECC-HHHHHH
Q ss_conf             10147877999869702634899999-85399--48999299-899988
Q gi|254781000|r  286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP--HILYISCN-PDSLCR  330 (371)
Q Consensus       286 ~~~~~~~d~vilDPPR~G~~~~~~~~-~~~~~--~ivYVSCn-p~Tlar  330 (371)
T Consensus       180 --~~~~FDvIDLDPy--Gs~s~FLDsAvqav~~gGLL~vT~TD~aVL~g  224 (525)
T KOG1253         180 --VAKFFDVIDLDPY--GSPSPFLDSAVQAVRDGGLLCVTCTDMAVLAG  224 (525)
T ss_pred             --CCCCCCEEECCCC--CCCCHHHHHHHHHHHCCCEEEEEECCHHHHCC
T ss_conf             --2124666723788--99627799999986408779998233576616