HHsearch alignment for GI: 254781000 and conserved domain: PRK00274
>PRK00274 ksgA dimethyladenosine transferase; Reviewed.
Probab=97.17 E-value=0.0036 Score=39.88 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHEEECCCCCC-CEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHH
Q ss_conf 57787755442011147788-33886024642358888506856998447588999999978860899649997689999
Q gi|254781000|r 191 NAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 (371)
Q Consensus 191 N~~~~~~l~~~v~~~~~~~~-~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~ 269 (371)
T Consensus 24 d~~ii~kIv~~----~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~------~~~~~ii~~D~L~~ 93 (267)
T PRK00274 24 DENIIDKIVRA----ADLQPGDRVLEIGPGLGALTEPLLERAAKVTAIEIDRDLAPILRE------TDNLTIIEGDALKV 93 (267)
T ss_pred CHHHHHHHHHH----CCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHH------CCCEEEEECHHHHC
T ss_conf 98999999996----089999907996388888999999626805886368899999850------47869996506647
Q ss_pred HHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHHHHHHHHHHCCC---CEEEEECCHHHHHHHH--------------
Q ss_conf 89886233222232101014787799986970263489999985399---4899929989998869--------------
Q gi|254781000|r 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSLCRDL-------------- 332 (371)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~---~ivYVSCnp~TlarD~-------------- 332 (371)
T Consensus 94 ~~~~~-------------~~~~~~~vvgNLPY~Iss~il~~~l~~~~~~~~~vl------mvQkEvA~Ri~a~p~~k~y~ 154 (267)
T PRK00274 94 DLEEL-------------AEGQPLKVVANLPYNISTPLLFKLLEEAPPIRDMVL------MLQKEVAERIVAKPGSKAYG 154 (267)
T ss_pred CHHHH-------------CCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHH------HHHHHHHHHHHCCCCCCCCC
T ss_conf 86774-------------567872799558830312899999854754124001------11587777762479997516
Q ss_pred --HHHCC-CCE---EEEEEEEECCCCCCCEEE-EEEEEECCC
Q ss_conf --98426-967---999999717989872489-999998561
Q gi|254781000|r 333 --SILST-THT---IERLALFDQFPYTRHMEC-GVLLVRKPS 367 (371)
Q Consensus 333 --~~l~~-gy~---i~~~~~~D~FP~T~HvE~-v~~l~R~~~ 367 (371)
T Consensus 155 ~LSv~~q~~~~~~~~~~V~~~~F~P~-PkVdS~vi~l~p~~~ 195 (267)
T PRK00274 155 RLSVLLQYYADVEKVFDVPPSAFYPP-PKVDSAVVRLVPKEP 195 (267)
T ss_pred HHHHHHHHHHHEEEEEEECHHHCCCC-CCCEEEEEEEEECCC
T ss_conf 88999999863312115767765679-874179999997898