HHsearch alignment for GI: 254781000 and conserved domain: PRK04338

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional.
Probab=98.48  E-value=1.9e-06  Score=61.26  Aligned_cols=160  Identities=17%  Similarity=0.186  Sum_probs=104.1

Q ss_pred             CCCHHHHHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCH
Q ss_conf             2357787755442011147788338860246423588885068--56998447588999999978860899649997689
Q gi|254781000|r  189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS  266 (371)
Q Consensus       189 Q~N~~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a  266 (371)
T Consensus        34 ~~nRDlsvl~~~~~~---~~~~~~ilDalsasGiR~iRy~~E~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~v~~~dA  110 (376)
T PRK04338         34 ELNRDISVLALKAFG---PKRRKSVLDALSASGIRGIRYALETGVEKVILNDINPDAVELIKKNLELNGLENAEVFNEDA  110 (376)
T ss_pred             CCCCCHHHHHHHHHH---CCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCH
T ss_conf             043429999999974---20697687406765499999987279987999569999999999999982998269813248


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHHHHHHH-HHHCCC--CEEEEEC---------CHHHHHHHH--
Q ss_conf             99989886233222232101014787799986970263489999-985399--4899929---------989998869--
Q gi|254781000|r  267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP--HILYISC---------NPDSLCRDL--  332 (371)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~-~~~~~~--~ivYVSC---------np~TlarD~--  332 (371)
T Consensus       111 n~lm~~~---------------~~~fD~IDlDPf--GSp~pflDsAi~~v~~~GlL~vTaTD~a~L~G~~~~~~~r~Yga  173 (376)
T PRK04338        111 NVLLHEN---------------ERKFDVVDIDPF--GSPAPFLDSAIRALRRGGLLCVTATDTAVLCGAYPKSCLRKYGA  173 (376)
T ss_pred             HHHHHHC---------------CCCCCEEEECCC--CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCC
T ss_conf             9999837---------------875877867899--99208799999984039889999468610048880468787177


Q ss_pred             HHHCCCC------E-------------EEEEEEEECCCCCCCEEEEEEEEECCCC
Q ss_conf             9842696------7-------------9999997179898724899999985612
Q gi|254781000|r  333 SILSTTH------T-------------IERLALFDQFPYTRHMECGVLLVRKPSG  368 (371)
Q Consensus       333 ~~l~~gy------~-------------i~~~~~~D~FP~T~HvE~v~~l~R~~~~  368 (371)
T Consensus       174 ~~~~~~~~hE~glRiLl~~i~r~Aa~~~~~i~PllS~~~~hy~Rv~vrV~~~~~~  228 (376)
T PRK04338        174 VPLKTEFYHEMGLRILIGYVAREAAKYDKGLKPLLSHVTDHYYRVFLKVERGAKK  228 (376)
T ss_pred             EECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEEEECCHHH
T ss_conf             6325713577889999999999999838853899998607589999998067788