HHsearch alignment for GI: 254781000 and conserved domain: PRK04338
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional.
Probab=98.48 E-value=1.9e-06 Score=61.26 Aligned_cols=160 Identities=17% Similarity=0.186 Sum_probs=104.1
Q ss_pred CCCHHHHHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCH
Q ss_conf 2357787755442011147788338860246423588885068--56998447588999999978860899649997689
Q gi|254781000|r 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 (371)
Q Consensus 189 Q~N~~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a 266 (371)
T Consensus 34 ~~nRDlsvl~~~~~~---~~~~~~ilDalsasGiR~iRy~~E~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~v~~~dA 110 (376)
T PRK04338 34 ELNRDISVLALKAFG---PKRRKSVLDALSASGIRGIRYALETGVEKVILNDINPDAVELIKKNLELNGLENAEVFNEDA 110 (376)
T ss_pred CCCCCHHHHHHHHHH---CCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCH
T ss_conf 043429999999974---20697687406765499999987279987999569999999999999982998269813248
Q ss_pred HHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHHHHHHH-HHHCCC--CEEEEEC---------CHHHHHHHH--
Q ss_conf 99989886233222232101014787799986970263489999-985399--4899929---------989998869--
Q gi|254781000|r 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP--HILYISC---------NPDSLCRDL-- 332 (371)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~-~~~~~~--~ivYVSC---------np~TlarD~-- 332 (371)
T Consensus 111 n~lm~~~---------------~~~fD~IDlDPf--GSp~pflDsAi~~v~~~GlL~vTaTD~a~L~G~~~~~~~r~Yga 173 (376)
T PRK04338 111 NVLLHEN---------------ERKFDVVDIDPF--GSPAPFLDSAIRALRRGGLLCVTATDTAVLCGAYPKSCLRKYGA 173 (376)
T ss_pred HHHHHHC---------------CCCCCEEEECCC--CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCC
T ss_conf 9999837---------------875877867899--99208799999984039889999468610048880468787177
Q ss_pred HHHCCCC------E-------------EEEEEEEECCCCCCCEEEEEEEEECCCC
Q ss_conf 9842696------7-------------9999997179898724899999985612
Q gi|254781000|r 333 SILSTTH------T-------------IERLALFDQFPYTRHMECGVLLVRKPSG 368 (371)
Q Consensus 333 ~~l~~gy------~-------------i~~~~~~D~FP~T~HvE~v~~l~R~~~~ 368 (371)
T Consensus 174 ~~~~~~~~hE~glRiLl~~i~r~Aa~~~~~i~PllS~~~~hy~Rv~vrV~~~~~~ 228 (376)
T PRK04338 174 VPLKTEFYHEMGLRILIGYVAREAAKYDKGLKPLLSHVTDHYYRVFLKVERGAKK 228 (376)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEEEECCHHH
T ss_conf 6325713577889999999999999838853899998607589999998067788