HHsearch alignment for GI: 254781000 and conserved domain: PRK05031
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated.
Probab=100.00 E-value=0 Score=697.14 Aligned_cols=360 Identities=63% Similarity=1.043 Sum_probs=342.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCEEECCCCCCCCHH
Q ss_conf 67666598999999999999998651887763028987682268999999768916999982899737975637458889
Q gi|254781000|r 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLL 82 (371)
Q Consensus 3 ~~l~~~~Y~~QL~~K~~~v~~~l~r~~~~~~~i~~s~~~~YRnr~~l~v~~~~~~~~~g~~~~~s~~iv~i~~C~i~~~~ 82 (371)
T Consensus 4 ~~~~~~~Y~~QL~~K~~~v~~~l~r~~~~~~~i~~sp~~~YRnk~~f~v~~~~~~~~~g~~~~~s~~~v~i~~C~i~~~~ 83 (363)
T PRK05031 4 ECLPPEQYEAQLAEKVARLKQLFAPFSAPEPEVFRSPPSHYRMRAEFRIWHEGDDLYYAMFDQQTKQKIRIDQFPIASEL 83 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCEEECCCCCCCCHH
T ss_conf 78883068999999999999999862799874368972024687696646868937999972789963788888587788
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEE
Q ss_conf 99999999986440885334257878898049949999973777895589999999975321341689725379828960
Q gi|254781000|r 83 INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 (371)
Q Consensus 83 i~~~~~~l~~~~~~~~~l~~~l~~i~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (371)
T Consensus 84 i~~~~~~l~~~~~~~~~l~~~~~~v~~~~~~~g~~~v~li~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~ 160 (363)
T PRK05031 84 INALMPALLAALRANPVLRHKLFQVDFLSTLSGEILVSLLYHKKLDEEWEQAAEALADALRF---NVHIIGRSRKQKIVL 160 (363)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCC---CEEEEECCCCCEEEC
T ss_conf 99999999999876763000136677886168846999995477777799999999986376---469985378717954
Q ss_pred CCCCEEEEEEECCCEEEEEECCHHHHCCCHHHHHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHH
Q ss_conf 56641489996791279997641331235778775544201114778833886024642358888506856998447588
Q gi|254781000|r 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 (371)
Q Consensus 163 g~~~~~e~l~~~~~~~~f~i~p~sFfQ~N~~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ 242 (371)
T Consensus 161 g~~~i~e~l~~~~~~~~f~~~p~sFfQvN~~~~e~l~~~a~~~~~~~~~~vlDLYcG~Gtfsl~LA~~~~~V~gVE~~~~ 240 (363)
T PRK05031 161 DQDYVDETLPVAGREFIYRQVENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKP 240 (363)
T ss_pred CCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCEEEEEECCHH
T ss_conf 78705789875794468996799842479899999999999976138982898605866426998862687999953899
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999997886089964999768999989886233222232101014787799986970263489999985399489992
Q gi|254781000|r 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322 (371)
Q Consensus 243 ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYVS 322 (371)
T Consensus 241 aV~~A~~NA~~N~i~N~~fi~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~d~vvvDPPR~Gl~~~~~~~i~~~~rIVYVS 320 (363)
T PRK05031 241 SVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNFSTIFVDPPRAGLDEETLKLVQNYERILYIS 320 (363)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCEEEEEE
T ss_conf 99999999998699864999658999999873431010012466443558648989998887499999983689099992
Q ss_pred CCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 9989998869984269679999997179898724899999985
Q gi|254781000|r 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 (371)
Q Consensus 323 Cnp~TlarD~~~l~~gy~i~~~~~~D~FP~T~HvE~v~~l~R~ 365 (371)
T Consensus 321 CnP~TlaRDl~~L~~~y~l~~v~~vDmFPqT~HvE~valL~rk 363 (363)
T PRK05031 321 CNPETLKENLETLSQTHKVERFALFDQFPYTHHMECGVLLEKK 363 (363)
T ss_pred CCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCEEEEEEEEEC
T ss_conf 8989999999998744658899984269999727899999809