HHsearch alignment for GI: 254781000 and conserved domain: PRK10901
>PRK10901 16S rRNA methyltransferase B; Provisional.
Probab=98.92 E-value=7.8e-08 Score=70.32 Aligned_cols=146 Identities=14% Similarity=0.172 Sum_probs=95.9
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCC
Q ss_conf 147788-338860246423588885068--56998447588999999978860899649997689999898862332222
Q gi|254781000|r 205 ATKGIQ-GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 (371)
Q Consensus 205 ~~~~~~-~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~ 281 (371)
T Consensus 240 ll~p~~g~~VLD~CAaPGGKt~~la~~~~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~-~~v~~~d~~~~-~---------- 307 (428)
T PRK10901 240 LLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYP-S---------- 307 (428)
T ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCC-EEEEECCCCCH-H----------
T ss_conf 64988898798716887668999999645892899969888999999999975997-39997765572-3----------
Q ss_pred CCCCHHCCCCCCEEEECCCCCCHHH--------------HHHH-------HHH----CC-C--CEEEEECCHHHHH--HH
Q ss_conf 3210101478779998697026348--------------9999-------985----39-9--4899929989998--86
Q gi|254781000|r 282 LKDIDIHSYRFKTIFVDPPRSGLDD--------------ATVG-------MVQ----AY-P--HILYISCNPDSLC--RD 331 (371)
Q Consensus 282 ~~~~~~~~~~~d~vilDPPR~G~~~--------------~~~~-------~~~----~~-~--~ivYVSCnp~Tla--rD 331 (371)
T Consensus 308 ---~~~~~~~fD~ILlDaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTCSi~~eENe~~ 384 (428)
T PRK10901 308 ---QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSQQ 384 (428)
T ss_pred ---HHCCCCCCCEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
T ss_conf ---31344567879975898887244468542112899999999999999999999866889889999899995778999
Q ss_pred HH-HHC--CCCEEEEEEE-----EECCCCCCCEEE--EEEEEEC
Q ss_conf 99-842--6967999999-----717989872489--9999985
Q gi|254781000|r 332 LS-ILS--TTHTIERLAL-----FDQFPYTRHMEC--GVLLVRK 365 (371)
Q Consensus 332 ~~-~l~--~gy~i~~~~~-----~D~FP~T~HvE~--v~~l~R~ 365 (371)
T Consensus 385 I~~FL~~~~d~~l~~~~~~~~~~~~~~P~~~~~DGFf~a~L~kk 428 (428)
T PRK10901 385 IKAFLQRTPDAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK 428 (428)
T ss_pred HHHHHHHCCCCEECCCCCCCCCCEEECCCCCCCCCEEEEEEEEC
T ss_conf 99999859997860677889998788999999873799999849