HHsearch alignment for GI: 254781000 and conserved domain: PRK11188
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional.
Probab=94.76 E-value=0.11 Score=30.22 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=53.6
Q ss_pred CCEEEEECCCCCHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHH--HHHHHHHCCCCCCCCC
Q ss_conf 8338860246423588885068---5699844758899999997886089964999768999--9898862332222321
Q gi|254781000|r 210 QGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE--FTQAMRREREFNRLKD 284 (371)
Q Consensus 210 ~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~--~~~~~~~~~~~~~~~~ 284 (371)
T Consensus 52 ~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~-----------pi~gv~~i~gDi~~~~~~~~i~~~-------- 112 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLER-------- 112 (209)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC-----------CCCCCEEECCCCCCHHHHHHHHHH--------
T ss_conf 9989980689975789999973999739998653045-----------378967640344588999999998--------
Q ss_pred CHHCCCCCCEEEEC--CCCCCHHH
Q ss_conf 01014787799986--97026348
Q gi|254781000|r 285 IDIHSYRFKTIFVD--PPRSGLDD 306 (371)
Q Consensus 285 ~~~~~~~~d~vilD--PPR~G~~~ 306 (371)
T Consensus 113 --~~~~~~DvVlSDmAPn~tG~~~ 134 (209)
T PRK11188 113 --VGDSKVDVVMSDMAPNMSGTPA 134 (209)
T ss_pred --HCCCCCCEEECCCCCCCCCCHH
T ss_conf --5898730896666656678703