HHsearch alignment for GI: 254781000 and conserved domain: PRK11188

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional.
Probab=94.76  E-value=0.11  Score=30.22  Aligned_cols=76  Identities=17%  Similarity=0.286  Sum_probs=53.6

Q ss_pred             CCEEEEECCCCCHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHH--HHHHHHHCCCCCCCCC
Q ss_conf             8338860246423588885068---5699844758899999997886089964999768999--9898862332222321
Q gi|254781000|r  210 QGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE--FTQAMRREREFNRLKD  284 (371)
Q Consensus       210 ~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~--~~~~~~~~~~~~~~~~  284 (371)
T Consensus        52 ~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~-----------pi~gv~~i~gDi~~~~~~~~i~~~--------  112 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLER--------  112 (209)
T ss_pred             CCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC-----------CCCCCEEECCCCCCHHHHHHHHHH--------
T ss_conf             9989980689975789999973999739998653045-----------378967640344588999999998--------


Q ss_pred             CHHCCCCCCEEEEC--CCCCCHHH
Q ss_conf             01014787799986--97026348
Q gi|254781000|r  285 IDIHSYRFKTIFVD--PPRSGLDD  306 (371)
Q Consensus       285 ~~~~~~~~d~vilD--PPR~G~~~  306 (371)
T Consensus       113 --~~~~~~DvVlSDmAPn~tG~~~  134 (209)
T PRK11188        113 --VGDSKVDVVMSDMAPNMSGTPA  134 (209)
T ss_pred             --HCCCCCCEEECCCCCCCCCCHH
T ss_conf             --5898730896666656678703