HHsearch alignment for GI: 254781000 and conserved domain: PRK13168
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=592.15 Aligned_cols=340 Identities=24% Similarity=0.284 Sum_probs=265.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCCCCCEEEEEEEEEEE--CCEEEEEEECCCCCCEEECCCCC
Q ss_conf 766659899999999999999865188776----302898768226899999976--89169999828997379756374
Q gi|254781000|r 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQTKERMRIDYFM 77 (371)
Q Consensus 4 ~l~~~~Y~~QL~~K~~~v~~~l~r~~~~~~----~i~~s~~~~YRnr~~l~v~~~--~~~~~~g~~~~~s~~iv~i~~C~ 77 (371)
T Consensus 91 ~~qhi~y~~Ql~~K~~~v~~~l~r~~~~~~~~~~~~i~~~~~~YRnr~~l~v~~~~~~~~~~~Gf~~~~S~~iv~i~~C~ 170 (440)
T PRK13168 91 SLQHLSVDAQIAAKQRALEDLLKHLGGVEPEEVLPPIAGPPWGYRRRARLSVRYVPKKGQLLVGFRERNSSDIVDIDQCP 170 (440)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCEEECCCCC
T ss_conf 64248999999999999999998764678641315646897450678997788853789568866506888368776773
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCC
Q ss_conf 58889999999999864408853342578788980499499999737778955899999999753213416897253798
Q gi|254781000|r 78 PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157 (371)
Q Consensus 78 i~~~~i~~~~~~l~~~~~~~~~l~~~l~~i~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 157 (371)
T Consensus 171 i~~~~i~~~l~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~l~ir~-~~~~~~~d~~~l~~~~---~~~~v~~~~~~~--~ 243 (440)
T PRK13168 171 VLVPPLSALLPPLRALLESLSA-KRHLGHVELAQGDNGTALVLRH-LEPLSEADRAKLRAFA---EEHGLQLYLQPK--G 243 (440)
T ss_pred CCCHHHHHHHHHHHHHHHHCCC-CCCCCEEEEEECCCEEEEEEEC-CCCCCHHHHHHHHHHH---HHCCEEEEEECC--C
T ss_conf 2798999999999999986674-5556759999847757999981-6889989999999877---533779998079--9
Q ss_pred EEEEECCCCEEEEEEECCCEEEEEECCHHHHCCCHHHHHHHHHHEEECCCCCC-CEEEEECCCCCHHHHHHHHCCCEEEE
Q ss_conf 28960566414899967912799976413312357787755442011147788-33886024642358888506856998
Q gi|254781000|r 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLA 236 (371)
Q Consensus 158 ~~~~~g~~~~~e~l~~~~~~~~f~i~p~sFfQ~N~~~~~~l~~~v~~~~~~~~-~~vlDLycG~G~fsl~La~~~~~V~g 236 (371)
T Consensus 244 ~~~~~~~~~~~~--~~~~~~~~~~~sp~sFfQvN~~~ae~L~~~a~~~l~~~~~~~VlDLYcGvGtfsl~LA~~~~~V~g 321 (440)
T PRK13168 244 PDTVHPLEQLEY--VLGEFGLRLAFSPTDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVG 321 (440)
T ss_pred CEEEECCCCEEE--ECCCCCEEEEECCCCEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCCCEEEE
T ss_conf 605763772589--716775587678998786599999999999999852678988998623856211113530676887
Q ss_pred ECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHHHHHHHHH--HC
Q ss_conf 4475889999999788608996499976899998988623322223210101478779998697026348999998--53
Q gi|254781000|r 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QA 314 (371)
Q Consensus 237 vE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~--~~ 314 (371)
T Consensus 322 vE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~------------~~~~~D~vi~DPPR~G~~-~~i~~l~~~~ 388 (440)
T PRK13168 322 VEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPW------------AKGGFDKVLLDPPRAGAF-EVMQALAKLK 388 (440)
T ss_pred EECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHH------------HCCCCCEEEECCCCCCHH-HHHHHHHHCC
T ss_conf 605799999999999974999878997464566355786------------379999899998852789-9999998479
Q ss_pred CCCEEEEECCHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 994899929989998869984-269679999997179898724899999985
Q gi|254781000|r 315 YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 (371)
Q Consensus 315 ~~~ivYVSCnp~TlarD~~~l-~~gy~i~~~~~~D~FP~T~HvE~v~~l~R~ 365 (371)
T Consensus 389 p~~IvYVSCnPaTlARDl~~L~~~GY~l~~i~~vDmFP~T~HvE~vall~R~ 440 (440)
T PRK13168 389 PKRIVYVSCNPATLARDAGVLVEAGYRLKRAGVLDMFPHTGHVESMALFERD 440 (440)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEEEEEEC
T ss_conf 8979999389899999999998789489599996069999838999999839