HHsearch alignment for GI: 254781000 and conserved domain: TIGR00406

>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=98.73  E-value=8.7e-08  Score=70.01  Aligned_cols=82  Identities=20%  Similarity=0.233  Sum_probs=63.3

Q ss_pred             EEEEEECCHHHHCCCHHHHHHHHHHEEECCCCCC--CEEEEECCCCCHHHHHHHH-CCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             2799976413312357787755442011147788--3388602464235888850-685699844758899999997886
Q gi|254781000|r  177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ--GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA  253 (371)
Q Consensus       177 ~~~f~i~p~sFfQ~N~~~~~~l~~~v~~~~~~~~--~~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~Na~~  253 (371)
T Consensus       162 ~~~~~lDPGlAFGTGtH~TT~LCLe~L~~~d~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~l  241 (330)
T TIGR00406       162 ALIIMLDPGLAFGTGTHPTTSLCLELLEDLDLKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL  241 (330)
T ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHH
T ss_conf             13677567645688974578999998740147776654787126717899999975123112213772899999976874


Q ss_pred             CCCCC
Q ss_conf             08996
Q gi|254781000|r  254 NHVNN  258 (371)
Q Consensus       254 N~i~n  258 (371)
T Consensus       242 N~v~~  246 (330)
T TIGR00406       242 NQVSD  246 (330)
T ss_pred             CCCCH
T ss_conf             58864