HHsearch alignment for GI: 254781000 and conserved domain: TIGR00675
>TIGR00675 dcm DNA-cytosine methyltransferase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.73 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine , , . In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA , . The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A : the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation.
Probab=95.40 E-value=0.019 Score=35.19 Aligned_cols=119 Identities=21% Similarity=0.316 Sum_probs=72.1
Q ss_pred EEEECCCCCHHHHHHHH-C------CCEEEEECC--CHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCC
Q ss_conf 88602464235888850-6------856998447--58899999997886089964999768999989886233222232
Q gi|254781000|r 213 LLELYCGNGNFSLVLAR-H------FDRVLAVEI--AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 (371)
Q Consensus 213 vlDLycG~G~fsl~La~-~------~~~V~gvE~--~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~ 283 (371)
T Consensus 1 ~idLFaGiGG~rlGfe~~g~~l~~~~~~V~~sE~PRdk~A~~tY~~Nf~~----~~~~~~~DI~~i~~~~~-------~~ 69 (425)
T TIGR00675 1 VIDLFAGIGGIRLGFEQAGKELTVAFKCVFASEIPRDKYAQKTYEANFGN----DEKVPFGDITKISPSDL-------LR 69 (425)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCC----CCEECCCCCCCCCCCCC-------CC
T ss_conf 94542551357899997410141113788720166877899999976478----84206776333660115-------00
Q ss_pred CCHHCCCCCCEEEECCC---------CC---CHH--H-------HHHHHHH-CCCCE-EE------EECCH----HHHHH
Q ss_conf 10101478779998697---------02---634--8-------9999985-39948-99------92998----99988
Q gi|254781000|r 284 DIDIHSYRFKTIFVDPP---------RS---GLD--D-------ATVGMVQ-AYPHI-LY------ISCNP----DSLCR 330 (371)
Q Consensus 284 ~~~~~~~~~d~vilDPP---------R~---G~~--~-------~~~~~~~-~~~~i-vY------VSCnp----~Tlar 330 (371)
T Consensus 70 --~~~~Pd~D~L~gGFPCQ~FS~AG~~~~~~GF~dED~RGtLFFe~~RilK~KkP~~FllENVkgL~~hd~~~~G~Tf~v 147 (425)
T TIGR00675 70 --HIAIPDFDILLGGFPCQPFSIAGKRKGELGFEDEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKSQRGRTFKV 147 (425)
T ss_pred --CCCCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCCCCHHHH
T ss_conf --124886789963899713446411676688656677775289989999851895788443611017886134527899
Q ss_pred HHHHHCC-CCEEEEE
Q ss_conf 6998426-9679999
Q gi|254781000|r 331 DLSILST-THTIERL 344 (371)
Q Consensus 331 D~~~l~~-gy~i~~~ 344 (371)
T Consensus 148 I~~~Le~lGY~v~~~ 162 (425)
T TIGR00675 148 IIETLEELGYKVEYK 162 (425)
T ss_pred HHHHHHHCCCEEEHH
T ss_conf 999998738877336