HHsearch alignment for GI: 254781000 and conserved domain: TIGR01177

>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..

Probab=96.06  E-value=0.0035  Score=39.96  Aligned_cols=106  Identities=18%  Similarity=0.323  Sum_probs=74.7

Q ss_pred             HHHHCCCHHHHHHHHHHEEECCCCC-CCEEEEECCCCCHHHHHHHHCCCEEEEE-CCCHHHHHHHHHHHHHCCCCC--EE
Q ss_conf             1331235778775544201114778-8338860246423588885068569984-475889999999788608996--49
Q gi|254781000|r  185 NSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARHFDRVLAV-EIAKPSVEAARYNIAANHVNN--VK  260 (371)
Q Consensus       185 ~sFfQ~N~~~~~~l~~~v~~~~~~~-~~~vlDLycG~G~fsl~La~~~~~V~gv-E~~~~ai~~A~~Na~~N~i~n--~~  260 (371)
T Consensus       179 ~p~~~p~~-~~p~~~~~~~~~~~~~~g~~~~dp~~g~gg~~~~~gl~g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~  257 (358)
T TIGR01177       179 RPFFKPGS-LDPKLARALVNLAGVKEGDRLLDPFCGTGGFLIEAGLLGAKPIGCGDLDWKLVEGARLNLEHYGIEDKVFS  257 (358)
T ss_pred             CCCCCCCC-CCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEE
T ss_conf             64325655-55467777765420246751004222666033233332110002440356764252111333055431567


Q ss_pred             EEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCC
Q ss_conf             9976899998988623322223210101478779998697026
Q gi|254781000|r  261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG  303 (371)
Q Consensus       261 f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G  303 (371)
T Consensus       258 ~~~~~~~~~~~~~~~------------~~~~~~~~~~d~p~g~  288 (358)
T TIGR01177       258 VKRGDAKDLPLRLPG------------LDESVDAIATDPPYGR  288 (358)
T ss_pred             EEECCCHHCCCCCCC------------CHHHHHHHHCCCCCCC
T ss_conf             640330011100353------------1011222212565453