HHsearch alignment for GI: 254781000 and conserved domain: cd02038

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=90.09  E-value=1.4  Score=23.01  Aligned_cols=65  Identities=26%  Similarity=0.425  Sum_probs=44.2

Q ss_pred             HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCC
Q ss_conf             35888850685699844758899999997886089964999768999989886233222232101014787799986970
Q gi|254781000|r  222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR  301 (371)
Q Consensus       222 ~fsl~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR  301 (371)
T Consensus        19 nLa~~la~~G~~vll~D~D~-------------g~an~-------------------------------~~D~viiD~~-   53 (139)
T cd02038          19 NLALALAKLGKRVLLLDADL-------------GLANL-------------------------------DYDYIIIDTG-   53 (139)
T ss_pred             HHHHHHHHCCCCEEEEECCC-------------CCCCC-------------------------------CCCEEEEECC-
T ss_conf             99999997899699998989-------------99657-------------------------------9999999489-


Q ss_pred             CCHHHHHHHHHHCCCC-EEEEECCHHHHHHHH
Q ss_conf             2634899999853994-899929989998869
Q gi|254781000|r  302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL  332 (371)
Q Consensus       302 ~G~~~~~~~~~~~~~~-ivYVSCnp~TlarD~  332 (371)
T Consensus        54 aG~~~~~~~~~~~ad~~lvV~tpeptSi-~DA   84 (139)
T cd02038          54 AGISDNVLDFFLAADEVIVVTTPEPTSI-TDA   84 (139)
T ss_pred             CCCCHHHHHHHHHCCCEEEEECCCHHHH-HHH
T ss_conf             9987789999995895799958970679-999