HHsearch alignment for GI: 254781000 and conserved domain: cd02038
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=90.09 E-value=1.4 Score=23.01 Aligned_cols=65 Identities=26% Similarity=0.425 Sum_probs=44.2
Q ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCC
Q ss_conf 35888850685699844758899999997886089964999768999989886233222232101014787799986970
Q gi|254781000|r 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 (371)
Q Consensus 222 ~fsl~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR 301 (371)
T Consensus 19 nLa~~la~~G~~vll~D~D~-------------g~an~-------------------------------~~D~viiD~~- 53 (139)
T cd02038 19 NLALALAKLGKRVLLLDADL-------------GLANL-------------------------------DYDYIIIDTG- 53 (139)
T ss_pred HHHHHHHHCCCCEEEEECCC-------------CCCCC-------------------------------CCCEEEEECC-
T ss_conf 99999997899699998989-------------99657-------------------------------9999999489-
Q ss_pred CCHHHHHHHHHHCCCC-EEEEECCHHHHHHHH
Q ss_conf 2634899999853994-899929989998869
Q gi|254781000|r 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL 332 (371)
Q Consensus 302 ~G~~~~~~~~~~~~~~-ivYVSCnp~TlarD~ 332 (371)
T Consensus 54 aG~~~~~~~~~~~ad~~lvV~tpeptSi-~DA 84 (139)
T cd02038 54 AGISDNVLDFFLAADEVIVVTTPEPTSI-TDA 84 (139)
T ss_pred CCCCHHHHHHHHHCCCEEEEECCCHHHH-HHH
T ss_conf 9987789999995895799958970679-999