HHsearch alignment for GI: 254781000 and conserved domain: pfam00398
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=97.72 E-value=0.00033 Score=46.64 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHEEECCCCCC-CEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHH
Q ss_conf 57787755442011147788-33886024642358888506856998447588999999978860899649997689999
Q gi|254781000|r 191 NAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 (371)
Q Consensus 191 N~~~~~~l~~~v~~~~~~~~-~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~ 269 (371)
T Consensus 15 d~~i~~kIv----~~~~~~~~d~VlEIGPG~G~LT~~L~~~~~~v~aiE~D~~l~~~L~~~~~--~~~~~~ii~~D~l~~ 88 (258)
T pfam00398 15 NKKVINRIV----DKANLQESDTVLEIGPGKGALTEELAKRAKQVVAIEIDPRLAKRLQKKLA--LHPNVEVVHQDFLKF 88 (258)
T ss_pred CHHHHHHHH----HHCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC--CCCCEEEEECCHHCC
T ss_conf 999999999----97089999979997996239999999616947999544779999998644--289779996630105
Q ss_pred HHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHHHHHHHHHHC--C--C-CEEEEECCHH-HHH-------HH-HHHH
Q ss_conf 898862332222321010147877999869702634899999853--9--9-4899929989-998-------86-9984
Q gi|254781000|r 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--Y--P-HILYISCNPD-SLC-------RD-LSIL 335 (371)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~--~--~-~ivYVSCnp~-Tla-------rD-~~~l 335 (371)
T Consensus 89 d----------------~~~~~~~~vvgNLPY~Iss~il~~ll~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~y~~LSv~ 152 (258)
T pfam00398 89 S----------------FPKHEPFLVVGNIPYNITTPIVKKLLFEPRFGRVKMLLVVQKEFARRLLARPGSKIYSRLTVL 152 (258)
T ss_pred C----------------CCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 7----------------545786168944886341789999997047672048999889999998558998651368999
Q ss_pred CC-CC---EEEEEEEEECCCCCCCEEE-EEEEEECCC
Q ss_conf 26-96---7999999717989872489-999998561
Q gi|254781000|r 336 ST-TH---TIERLALFDQFPYTRHMEC-GVLLVRKPS 367 (371)
Q Consensus 336 ~~-gy---~i~~~~~~D~FP~T~HvE~-v~~l~R~~~ 367 (371)
T Consensus 153 ~q~~~~~~~l~~V~~~~F~P~-PkVdSavv~l~~~~~ 188 (258)
T pfam00398 153 TEPFTDIKLVAKVPRSSFRPP-PKVDSALVRLERRDH 188 (258)
T ss_pred HHHHHEEEEEEEECHHHEECC-CCCCEEEEEEEECCC
T ss_conf 999740515228551414659-987479999998988