HHsearch alignment for GI: 254781000 and conserved domain: pfam01189

Probab=98.81  E-value=2.3e-07  Score=67.24  Aligned_cols=139  Identities=16%  Similarity=0.217  Sum_probs=93.3

Q ss_pred             CCCCC-CEEEEECCCCCHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCC
Q ss_conf             47788-338860246423588885068---56998447588999999978860899649997689999898862332222
Q gi|254781000|r  206 TKGIQ-GDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR  281 (371)
Q Consensus       206 ~~~~~-~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~  281 (371)
T Consensus        80 L~p~~g~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~~d~~~~~~~---------  150 (277)
T pfam01189        80 LNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQIDQK---------  150 (277)
T ss_pred             HCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC---------
T ss_conf             18899998988367888169999987589877998379789999999999975997479996644455743---------


Q ss_pred             CCCCHHCCCCCCEEEECCCCCCHHH--------------HHHH-------HHH------CC-CCEEEEECCHHHHHHH--
Q ss_conf             3210101478779998697026348--------------9999-------985------39-9489992998999886--
Q gi|254781000|r  282 LKDIDIHSYRFKTIFVDPPRSGLDD--------------ATVG-------MVQ------AY-PHILYISCNPDSLCRD--  331 (371)
Q Consensus       282 ~~~~~~~~~~~d~vilDPPR~G~~~--------------~~~~-------~~~------~~-~~ivYVSCnp~TlarD--  331 (371)
T Consensus       151 -----~~~~~fD~vLvDaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eENe~v  225 (277)
T pfam01189       151 -----LLGGEFDRILLDAPCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTCSVLPEENEAV  225 (277)
T ss_pred             -----CCCCCCCEEEECCCCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf             -----466666579972898898634558531211999999999999999999999971769989999499998998999


Q ss_pred             HH-HHCC--CCEEEEEE---------------EEECCCCCCCEEE
Q ss_conf             99-8426--96799999---------------9717989872489
Q gi|254781000|r  332 LS-ILST--THTIERLA---------------LFDQFPYTRHMEC  358 (371)
Q Consensus       332 ~~-~l~~--gy~i~~~~---------------~~D~FP~T~HvE~  358 (371)
T Consensus       226 V~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dG  270 (277)
T pfam01189       226 IKYFLQKRPDVELVPTGLSEGKIALAKRIVKGGLQSLPHELNRDG  270 (277)
T ss_pred             HHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf             999998699989904666545433345577990798989999772