HHsearch alignment for GI: 254781000 and conserved domain: pfam01728
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=94.72 E-value=0.16 Score=29.23 Aligned_cols=75 Identities=25% Similarity=0.343 Sum_probs=51.3
Q ss_pred CCEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHH-HHHCCCCCCCCCCH
Q ss_conf 8338860246423588885068--56998447588999999978860899649997689999898-86233222232101
Q gi|254781000|r 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA-MRREREFNRLKDID 286 (371)
Q Consensus 210 ~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~-~~~~~~~~~~~~~~ 286 (371)
T Consensus 22 ~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~-----------~~~~~~~~i~gDi~~~~~~~~i~~---------- 80 (176)
T pfam01728 22 GKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPM-----------KPIQGVTFLRGDITDPETLEKLLE---------- 80 (176)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCC-----------CCCCCCEEECCCCCCHHHHHHHHH----------
T ss_conf 99999968999769999998566873999973446-----------567784565167668789999999----------
Q ss_pred HCCCCCCEEEEC--CCCCCHH
Q ss_conf 014787799986--9702634
Q gi|254781000|r 287 IHSYRFKTIFVD--PPRSGLD 305 (371)
Q Consensus 287 ~~~~~~d~vilD--PPR~G~~ 305 (371)
T Consensus 81 ~~~~~~DlV~sD~a~~~~g~~ 101 (176)
T pfam01728 81 LLPGKVDLVLCDGAPNVSGLE 101 (176)
T ss_pred HCCCCCCEEEECCCCCCCCCC
T ss_conf 739984689733665656773