HHsearch alignment for GI: 254781000 and conserved domain: pfam01861

>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.

Probab=95.75  E-value=0.031  Score=33.77  Aligned_cols=115  Identities=16%  Similarity=0.200  Sum_probs=73.6

Q ss_pred             HHHHHH--HCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCC
Q ss_conf             588885--068569984475889999999788608996499976899998988623322223210101478779998697
Q gi|254781000|r  223 FSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP  300 (371)
Q Consensus       223 fsl~La--~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPP  300 (371)
T Consensus        57 tSlA~al~~~p~~I~VvDIDeRll~fI~~~A~~~gl-~i~~~~~DlR~pLP~~l~--------------~~FD~f~TDPP  121 (243)
T pfam01861        57 TSLAAALTGLPKRIAVVDIDERLIKFIERVAKEEGL-KIEAFVHDLRNPLPEDLK--------------HKFDVFITDPP  121 (243)
T ss_pred             HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCHHHH--------------CCCCEEECCCC
T ss_conf             789999648985489996758999999999997499-716887410148999996--------------16798971899


Q ss_pred             CC--CHHHHHHHHHH---CCCCEEEE--ECCHHHHHH--HHH--HHCCCCEEEEE-EEEECCCC
Q ss_conf             02--63489999985---39948999--299899988--699--84269679999-99717989
Q gi|254781000|r  301 RS--GLDDATVGMVQ---AYPHILYI--SCNPDSLCR--DLS--ILSTTHTIERL-ALFDQFPY  352 (371)
Q Consensus       301 R~--G~~~~~~~~~~---~~~~ivYV--SCnp~Tlar--D~~--~l~~gy~i~~~-~~~D~FP~  352 (371)
T Consensus       122 yT~~G~~LFlsRgi~~Lk~eg~agYfglt~~esS~~kw~~~Qk~l~~~g~vItdii~~Fn~Y~~  185 (243)
T pfam01861       122 ETVDGLKAFLGRGIATLKGEGCAGYFGITHRESSLDKWREIQRMLIEMGVVITDLIRNFNVYEN  185 (243)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEHHHHHHHHHCCCC
T ss_conf             8778999999999998266885226876426014999999999999859209998766630567