HHsearch alignment for GI: 254781000 and conserved domain: pfam02527
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=96.64 E-value=0.015 Score=35.82 Aligned_cols=123 Identities=12% Similarity=0.077 Sum_probs=80.5
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHC--CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCC
Q ss_conf 14778833886024642358888506--8569984475889999999788608996499976899998988623322223
Q gi|254781000|r 205 ATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 (371)
Q Consensus 205 ~~~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~ 282 (371)
T Consensus 44 ~~~~~~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~~----------- 112 (184)
T pfam02527 44 YLDNIRIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQH----------- 112 (184)
T ss_pred HCCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCC-----------
T ss_conf 426679868834798884679999967785599992828999999999998599976999560441464-----------
Q ss_pred CCCHHCCCCCCEEEECCCCCCHHH-HHHHHHHC---CC-C-EEEEECCHHHHHHHHH-HHCC-CCEEEEEEEE
Q ss_conf 210101478779998697026348-99999853---99-4-8999299899988699-8426-9679999997
Q gi|254781000|r 283 KDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQA---YP-H-ILYISCNPDSLCRDLS-ILST-THTIERLALF 347 (371)
Q Consensus 283 ~~~~~~~~~~d~vilDPPR~G~~~-~~~~~~~~---~~-~-ivYVSCnp~TlarD~~-~l~~-gy~i~~~~~~ 347 (371)
T Consensus 113 ------~~~~D~v~a---RA~a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~l~~~~~~v~~~ 176 (184)
T pfam02527 113 ------EEQYDVITS---RAVASLNELTEWALPLLKPGGYFLAYKGKQAEDEIEELDKACQKLGVEVLFVPSL 176 (184)
T ss_pred ------CCCCCEEEE---CHHCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCCC
T ss_conf ------467878998---1005799999999986388989999889998999998787799829779764898