HHsearch alignment for GI: 254781000 and conserved domain: pfam03602
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=99.43 E-value=4e-12 Score=98.27 Aligned_cols=120 Identities=18% Similarity=0.297 Sum_probs=85.7
Q ss_pred HHHHHHHHHEEECCCCCCCEEEEECCCCCHHHH-HHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
Q ss_conf 787755442011147788338860246423588-8850685699844758899999997886089964999768999989
Q gi|254781000|r 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 (371)
Q Consensus 193 ~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl-~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~ 271 (371)
T Consensus 27 rvrEalFniL~~~~~i~~~~~LDLFaGSGslglEAlSRGA~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~-~~~~~~~ 105 (181)
T pfam03602 27 RVREALFNILAPYFELGGARVLDLFAGSGALGLEALSRGASSVVFVEKDKKAVATLKENLEALGLEGAVLRM-DAARALL 105 (181)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEC-CHHHHHH
T ss_conf 899999975013455489879982787269899999769988999969999999999999985899779981-0899998
Q ss_pred HHHHCCCCCCCCCCHHCCCCCCEEEECCC-CCCHHHHHHHHHHC-----CCCEEEEECCH
Q ss_conf 88623322223210101478779998697-02634899999853-----99489992998
Q gi|254781000|r 272 AMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQA-----YPHILYISCNP 325 (371)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~d~vilDPP-R~G~~~~~~~~~~~-----~~~ivYVSCnp 325 (371)
T Consensus 106 ~~~~------------~~~~fdiIF~DPPY~~~~~~~~l~~l~~~~~l~~~~iiiiE~~~ 153 (181)
T pfam03602 106 RLAG------------KGPPFDLVFLDPPYAKGLIEEALELLAEKGWLNPNALIVVETES 153 (181)
T ss_pred HHCC------------CCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 7533------------57888766359975420699999999966665798099999668