HHsearch alignment for GI: 254781000 and conserved domain: pfam03602

>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=99.43  E-value=4e-12  Score=98.27  Aligned_cols=120  Identities=18%  Similarity=0.297  Sum_probs=85.7

Q ss_pred             HHHHHHHHHEEECCCCCCCEEEEECCCCCHHHH-HHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
Q ss_conf             787755442011147788338860246423588-8850685699844758899999997886089964999768999989
Q gi|254781000|r  193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ  271 (371)
Q Consensus       193 ~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl-~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~  271 (371)
T Consensus        27 rvrEalFniL~~~~~i~~~~~LDLFaGSGslglEAlSRGA~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~-~~~~~~~  105 (181)
T pfam03602        27 RVREALFNILAPYFELGGARVLDLFAGSGALGLEALSRGASSVVFVEKDKKAVATLKENLEALGLEGAVLRM-DAARALL  105 (181)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEC-CHHHHHH
T ss_conf             899999975013455489879982787269899999769988999969999999999999985899779981-0899998


Q ss_pred             HHHHCCCCCCCCCCHHCCCCCCEEEECCC-CCCHHHHHHHHHHC-----CCCEEEEECCH
Q ss_conf             88623322223210101478779998697-02634899999853-----99489992998
Q gi|254781000|r  272 AMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQA-----YPHILYISCNP  325 (371)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~d~vilDPP-R~G~~~~~~~~~~~-----~~~ivYVSCnp  325 (371)
T Consensus       106 ~~~~------------~~~~fdiIF~DPPY~~~~~~~~l~~l~~~~~l~~~~iiiiE~~~  153 (181)
T pfam03602       106 RLAG------------KGPPFDLVFLDPPYAKGLIEEALELLAEKGWLNPNALIVVETES  153 (181)
T ss_pred             HHCC------------CCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf             7533------------57888766359975420699999999966665798099999668