HHsearch alignment for GI: 254781000 and conserved domain: pfam04445

>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=97.35  E-value=0.001  Score=43.41  Aligned_cols=73  Identities=21%  Similarity=0.186  Sum_probs=55.2

Q ss_pred             EEEEECCCCCHHHHHHHHCCCEEEEECCCHHH---HHHHHHHHHHCC------CCCEEEEECCHHHHHHHHHHCCCCCCC
Q ss_conf             38860246423588885068569984475889---999999788608------996499976899998988623322223
Q gi|254781000|r  212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS---VEAARYNIAANH------VNNVKIVRMSSKEFTQAMRREREFNRL  282 (371)
Q Consensus       212 ~vlDLycG~G~fsl~La~~~~~V~gvE~~~~a---i~~A~~Na~~N~------i~n~~f~~~~a~~~~~~~~~~~~~~~~  282 (371)
T Consensus        78 ~VlDATAGLG~DafiLAsLG~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gds~~~l~~~---------  148 (235)
T pfam04445        78 TVLDATAGLGRDAFVLASLGCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSADQLEPN---------  148 (235)
T ss_pred             EEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHC---------
T ss_conf             38987877578899998189969999788999999999999987481557999962899838879997524---------


Q ss_pred             CCCHHCCCCCCEEEECC
Q ss_conf             21010147877999869
Q gi|254781000|r  283 KDIDIHSYRFKTIFVDP  299 (371)
Q Consensus       283 ~~~~~~~~~~d~vilDP  299 (371)
T Consensus       149 ------~~~~DvIYLDP  159 (235)
T pfam04445       149 ------IDQPDVVYLDP  159 (235)
T ss_pred             ------CCCCCEEEECC
T ss_conf             ------68987899737