HHsearch alignment for GI: 254781000 and conserved domain: pfam05175
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.47 E-value=3.6e-13 Score=105.13 Aligned_cols=107 Identities=26% Similarity=0.424 Sum_probs=82.8
Q ss_pred EEEEECCHHHHCCCHHH-HHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 79997641331235778-7755442011147788338860246423588885068--56998447588999999978860
Q gi|254781000|r 178 LIYRQIENSFTQPNAGI-NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN 254 (371)
Q Consensus 178 ~~f~i~p~sFfQ~N~~~-~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~Na~~N 254 (371)
T Consensus 2 l~~~t~pGVFS~~~lD~Gt~lLl~~l~~---~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n 78 (170)
T pfam05175 2 LTFKTLPGVFSHGRLDIGSRLLLSHLPK---PLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAAN 78 (170)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHCCCC---CCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHH
T ss_conf 2899559887999879899999970897---7899499977648298999999789867985154499999999999980
Q ss_pred CCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCC-CCH
Q ss_conf 89964999768999989886233222232101014787799986970-263
Q gi|254781000|r 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGL 304 (371)
Q Consensus 255 ~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR-~G~ 304 (371)
T Consensus 79 ~l~~v~v~~~D~~~~-----------------~~~~~fD~IvsNPP~h~g~ 112 (170)
T pfam05175 79 GLENGEVFWSDLYSA-----------------VEPGKFDLIISNPPFHAGK 112 (170)
T ss_pred CCCEEEEEECCCCCC-----------------CCCCCEEEEEECCCCCCCC
T ss_conf 998489997446665-----------------7788660899897721142