HHsearch alignment for GI: 254781000 and conserved domain: smart00650
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.72 E-value=0.00071 Score=44.52 Aligned_cols=146 Identities=17% Similarity=0.199 Sum_probs=94.5
Q ss_pred HHHEEECCCCCCC-EEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCC
Q ss_conf 4420111477883-388602464235888850685699844758899999997886089964999768999989886233
Q gi|254781000|r 199 LEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 (371)
Q Consensus 199 ~~~v~~~~~~~~~-~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~ 277 (371)
T Consensus 2 i~kIv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~--~~~n~~ii~~D~L~~-------- 71 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA--AADNLTVIHGDALKF-------- 71 (169)
T ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHC--CCCCEEEEECCHHCC--------
T ss_conf 8899886389994979996897029999999731635316378899999998641--079779995711125--------
Q ss_pred CCCCCCCCHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-HH---------------CC-CCE
Q ss_conf 22223210101478779998697026348999998539948999299899988699-84---------------26-967
Q gi|254781000|r 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS-IL---------------ST-THT 340 (371)
Q Consensus 278 ~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYVSCnp~TlarD~~-~l---------------~~-gy~ 340 (371)
T Consensus 72 --------~~~~~~~~~iv~NLPY~Iss~il~~ll~~~~~~---~~~~lm~QkEvA~Ri~a~p~~k~y~~LSv~~q~~~~ 140 (169)
T smart00650 72 --------DLPKLQPYKVVGNLPYNISTPILFKLLEEPPAF---RDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPYFD 140 (169)
T ss_pred --------CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEE
T ss_conf --------531158736993476301189999998626541---266655399999998637898551499999998740
Q ss_pred ---EEEEEEEECCCCCCCEEE-EEEEEECC
Q ss_conf ---999999717989872489-99999856
Q gi|254781000|r 341 ---IERLALFDQFPYTRHMEC-GVLLVRKP 366 (371)
Q Consensus 341 ---i~~~~~~D~FP~T~HvE~-v~~l~R~~ 366 (371)
T Consensus 141 ~~~~~~V~~~~F~P~P-kVdS~vv~l~pkp 169 (169)
T smart00650 141 VKILFKVPPEAFRPPP-KVDSAVVRLERRP 169 (169)
T ss_pred EEEEEEECHHHCCCCC-CCEEEEEEEEECC
T ss_conf 7897899866578999-8408999999793